CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68181	cytosol
CDX69524
CDX74726
CDX75900
CDX77035	cytosol
CDX78827
CDX78988
CDX79871	cytosol
CDX80064	nucleus
CDX82382
CDX82758
CDX83349	nucleus
CDX85551
CDX85552
CDX85839	cytosol
CDX86314	cytosol, nucleus
CDX86636
CDX89827
CDX90991
CDX92112
CDX93424
CDX94002
CDX95888
CDX98668
CDY01177
CDY03026
CDY03233
CDY06455
CDY07801
CDY08822
CDY09346
CDY12145
CDY14538
CDY14829	cytosol
CDY15503
CDY17423
CDY18229
CDY20630
CDY20948
CDY26423
CDY31285
CDY31442
CDY31531
CDY33464
CDY33984
CDY34890
CDY35154
CDY35312	cytosol
CDY37975
CDY38546
CDY45189
CDY46427	nucleus
CDY47309
CDY47967	cytosol
CDY50423
CDY50604	cytosol
CDY50911	nucleus
CDY52540
CDY52767	nucleus
CDY53636
CDY53637
CDY54115
CDY54116
CDY54117
CDY54570
CDY58805
CDY60835
CDY61670
CDY62179
CDY62359
CDY64518	cytosol
CDY66046
CDY66254	nucleus
CDY68196
CDY68655	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18790.1	CDX86636	AT1G04400.1	11089975
AT2G18790.1	CDX89827	AT1G04400.1	11089975
AT2G18790.1	CDY15503	AT1G04400.1	11089975
AT2G18790.1	CDY18229	AT1G04400.1	11089975
AT2G18790.1	CDX93424	AT1G10470.1	11691995
AT2G18790.1	CDY07801	AT1G10470.1	11691995
AT2G18790.1	CDY20630	AT1G10470.1	11691995
AT2G18790.1	CDY20948	AT1G10470.1	11691995
AT2G18790.1	CDY34890	AT1G10470.1	11691995
AT2G18790.1	CDY37975	AT1G10470.1	11691995
AT2G18790.1	CDY66046	AT1G10470.1	11691995
AT2G18790.1	CDY46427	AT1G26960.1	23964902
AT2G18790.1	CDY52767	AT1G26960.1	23964902
AT2G18790.1	CDY46427	AT1G26960.1	23964902
AT2G18790.1	CDY52767	AT1G26960.1	23964902
AT2G18790.1	CDX68181	AT1G74490.1	23964902
AT2G18790.1	CDX85839	AT1G74490.1	23964902
AT2G18790.1	CDY50604	AT1G74490.1	23964902
AT2G18790.1	CDX68181	AT1G74490.1	23964902
AT2G18790.1	CDX85839	AT1G74490.1	23964902
AT2G18790.1	CDY50604	AT1G74490.1	23964902
AT2G18790.1	CDY03026	AT2G02950.1	10348744
AT2G18790.1	CDY09346	AT2G02950.1	10348744
AT2G18790.1	CDY17423	AT2G02950.1	10348744
AT2G18790.1	CDY45189	AT2G02950.1	10348744
AT2G18790.1	CDY60835	AT2G02950.1	10348744
AT2G18790.1	CDY62179	AT2G02950.1	10348744
AT2G18790.1	CDX75900	AT2G18790.1	15273290
AT2G18790.1	CDX82382	AT2G18790.1	15273290
AT2G18790.1	CDX92112	AT2G18790.1	15273290
AT2G18790.1	CDX95888	AT2G18790.1	15273290
AT2G18790.1	CDX75900	AT2G18790.1	19286967
AT2G18790.1	CDX82382	AT2G18790.1	19286967
AT2G18790.1	CDX92112	AT2G18790.1	19286967
AT2G18790.1	CDX95888	AT2G18790.1	19286967
AT2G18790.1	CDX77035	AT2G26190.1	23964902
AT2G18790.1	CDY35312	AT2G26190.1	23964902
AT2G18790.1	CDX77035	AT2G26190.1	23964902
AT2G18790.1	CDY35312	AT2G26190.1	23964902
AT2G18790.1	CDY12145	AT2G32950.1	11752373
AT2G18790.1	CDY52540	AT2G32950.1	11752373
AT2G18790.1	CDY54115	AT2G34590.1	23964902
AT2G18790.1	CDY54116	AT2G34590.1	23964902
AT2G18790.1	CDY54117	AT2G34590.1	23964902
AT2G18790.1	CDX79871	AT2G42400.1	22904146
AT2G18790.1	CDY14829	AT2G42400.1	22904146
AT2G18790.1	CDY47967	AT2G42400.1	22904146
AT2G18790.1	CDY64518	AT2G42400.1	22904146
AT2G18790.1	CDX79871	AT2G42400.1	22904146
AT2G18790.1	CDY14829	AT2G42400.1	22904146
AT2G18790.1	CDY47967	AT2G42400.1	22904146
AT2G18790.1	CDY64518	AT2G42400.1	22904146
AT2G18790.1	CDX74726	AT2G45290.1	23964902
AT2G18790.1	CDY68196	AT2G45290.1	23964902
AT2G18790.1	CDX80064	AT2G46970.1	23964902
AT2G18790.1	CDX83349	AT2G46970.1	23964902
AT2G18790.1	CDY50911	AT2G46970.1	23964902
AT2G18790.1	CDY66254	AT2G46970.1	23964902
AT2G18790.1	CDX80064	AT2G46970.1	23964902
AT2G18790.1	CDX83349	AT2G46970.1	23964902
AT2G18790.1	CDY50911	AT2G46970.1	23964902
AT2G18790.1	CDY66254	AT2G46970.1	23964902
AT2G18790.1	CDY01177	AT4G13940.1	23964902
AT2G18790.1	CDY47309	AT4G13940.1	23964902
AT2G18790.1	CDY50423	AT4G13940.1	23964902
AT2G18790.1	CDY58805	AT4G13940.1	23964902
AT2G18790.1	CDX78827	AT4G18130.1	15273290
AT2G18790.1	CDY61670	AT4G18130.1	15273290
AT2G18790.1	CDX78827	AT4G18130.1	19286967
AT2G18790.1	CDY61670	AT4G18130.1	19286967
AT2G18790.1	CDX78988	AT4G20360.1	23964902
AT2G18790.1	CDX82758	AT4G20360.1	23964902
AT2G18790.1	CDX94002	AT4G20360.1	23964902
AT2G18790.1	CDX98668	AT4G20360.1	23964902
AT2G18790.1	CDY31442	AT4G20360.1	23964902
AT2G18790.1	CDY54570	AT4G20360.1	23964902
AT2G18790.1	CDX69524	AT5G15450.1	23964902
AT2G18790.1	CDX85551	AT5G15450.1	23964902
AT2G18790.1	CDX85552	AT5G15450.1	23964902
AT2G18790.1	CDX90991	AT5G15450.1	23964902
AT2G18790.1	CDY26423	AT5G15450.1	23964902
AT2G18790.1	CDY06455	AT5G35840.1	15273290
AT2G18790.1	CDY38546	AT5G35840.1	15273290
AT2G18790.1	CDY06455	AT5G35840.1	19286967
AT2G18790.1	CDY38546	AT5G35840.1	19286967
AT2G18790.1	CDY03233	AT5G46240.1	23964902
AT2G18790.1	CDY33464	AT5G46240.1	23964902
AT2G18790.1	CDY35154	AT5G46240.1	23964902
AT2G18790.1	CDY62359	AT5G46240.1	23964902
AT2G18790.1	CDX86314	AT5G48300.1	23964902
AT2G18790.1	CDY68655	AT5G48300.1	23964902
AT2G18790.1	CDX86314	AT5G48300.1	23964902
AT2G18790.1	CDY68655	AT5G48300.1	23964902
AT2G18790.1	CDX86314	AT5G48300.1	23964902
AT2G18790.1	CDY68655	AT5G48300.1	23964902
AT2G18790.1	CDY31531	AT5G60600.1	23964902
AT2G18790.1	CDY53636	AT5G60600.1	23964902
AT2G18790.1	CDY53637	AT5G60600.1	23964902
AT2G18790.1	CDY08822	AT5G65090.1	23964902
AT2G18790.1	CDY14538	AT5G65090.1	23964902
AT2G18790.1	CDY31285	AT5G65090.1	23964902
AT2G18790.1	CDY33984	AT5G65090.1	23964902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92112	Canola	cytosol	94.43	97.27
AT2G18790.1	Thale cress	nucleus	90.07	89.76
CDX75900	Canola	cytosol	87.33	88.31
CDX82382	Canola	cytosol	13.36	84.78
Os03t0309200-01	Rice	nucleus, plasma membrane	70.21	73.21
Zm00001d028905_P001	Maize	extracellular	70.98	71.4
EER94971	Sorghum	plastid	71.4	70.8
TraesCS4D01G183400.1	Wheat	plastid	70.46	70.7
TraesCS4B01G182400.1	Wheat	plastid	70.38	70.5
TraesCS4A01G122500.2	Wheat	plastid	70.38	70.5
HORVU4Hr1G053400.1	Barley	plasma membrane	70.29	70.29
Zm00001d047632_P001	Maize	plastid	69.86	69.98
GSMUA_Achr3P08340_001	Banana	nucleus	64.21	68.87
Zm00001d025231_P001	Maize	cytosol	7.79	56.88
CDY61670	Canola	cytosol	53.42	55.91
CDX78827	Canola	cytosol	51.54	55.74
Zm00001d000219_P001	Maize	cytosol	5.14	54.05
CDY22632	Canola	cytosol, plastid	49.14	51.11
CDY06362	Canola	cytosol, plastid	48.89	50.94
CDY38546	Canola	cytosol, plastid	48.37	50.58
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	48.29	50.45
CDY42549	Canola	cytosol	9.59	49.56
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	49.06	49.35
CDX93501	Canola	cytosol	49.06	47.67
Zm00001d024238_P001	Maize	cytosol	12.24	32.5

Protein Annotations

MapMan:26.1.1.1	MapMan:26.4.1.2	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40	Gene3D:3.30.565.10
GO:A0A078E911	EnsemblPlants:CDX95888	ProteinID:CDX95888	ProteinID:CDX95888.1	InterPro:GAF	InterPro:GAF-like_dom_sf
GO:GO:0000155	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628
GO:GO:0009881	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0017006	GO:GO:0018298
GO:GO:0019538	GO:GO:0038023	GO:GO:0042803	EnsemblPlantsGene:GSBRNA2T00101878001	InterPro:HATPase_C	InterPro:HATPase_C_sf
InterPro:HisK_dim/P	InterPro:His_kinase_dom	InterPro:IPR000014	InterPro:IPR005467	InterPro:IPR016132	InterPro:IPR029016
InterPro:IPR036890	InterPro:PAS	InterPro:PAS-like_dom_sf	InterPro:PAS_2	InterPro:PAS_fold	PFAM:PF00360
PFAM:PF00512	PFAM:PF00989	PFAM:PF01590	PFAM:PF02518	PFAM:PF08446	PIRSF:PIRSF000084
PRINTS:PR01033	ScanProsite:PS00245	PFscan:PS50046	PFscan:PS50109	PFscan:PS50112	PANTHER:PTHR43719
PANTHER:PTHR43719:SF12	InterPro:Phyto_chromo_BS	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome	InterPro:Phytochrome_A-E	InterPro:Phytochrome_cen-reg
SMART:SM00065	SMART:SM00091	SMART:SM00387	SMART:SM00388	SUPFAM:SSF55781	SUPFAM:SSF55785
SUPFAM:SSF55874	TIGRFAMs:TIGR00229	UniParc:UPI0004EDE6E9	SEG:seg	:	:

Description

BnaC05g36390D

Coordinates

chrLK031891:-:1089503..1093971

Molecular Weight (calculated)

128876.0 Da

IEP (calculated)

5.807

GRAVY (calculated)

-0.122

Length

1168 amino acids

Sequence
(BLAST)

0001: MVSGVGGGGG SGGSGRGGGG EESSSTHRRE QAQSSGTKSL RPQNQPPQTE SMSKAIQQYT VDARLHAVFE QSGESGRSFD YSQSLKTTTY GSSVPEQQIT
0101: AYLSRIQRGG YIQPFGCMIA VDESTFTIIG FSENAREMLG LTPQSVPSLE RPEILAMGTD VRSLFTSSSS ILLERAFAAR EITLLNPVWI HSKYTGKPFY
0201: AILHRIDVGV VIDLEPARSE DPALSIAGAV QSQKLAVRAI SQLQSLPGGD IKLLCDTVVE SVRDLTGYDR VMVYKFHEDE HGEVVAESRR EDLEPYIGLH
0301: YPATDIPQAS RFLFKQNRVR MIVDCHATPV LVVQDDRLTQ SMCLVGSTLR APHGCHSQYM ANMGSIASLA MAVIINGSEE DGSSVAGGRS SMRLWGLVVC
0401: HHTSSRCIPF PLRYACEFLM QAFGLQLNME LQLALQMSEK RVLRTQTLLC DMLLRDSPAG IVTQSPSIMD LVKCDGAAFL YHGNYYPLGV APTEAQIKDV
0501: VEWLLANHAD STGLSTDSLG DAGYPGAAAL GDAVCGMAVA YITKRDFLFW FRSHTAKEIK WGGAKHHPED KDDGQRMHPR SSFKAFLEVV KSRSQPWETA
0601: EMDAIHSLQL ILRDSFKESE AAMNSKTADG AVQPYSMAGE QGIDELGAVA REMVRLIETA TVPIFAVDAG GCINGWNAKI AELSGLSVEE AMGKSLVSDL
0701: IYKENEETVD KLISRALRGD EDRNVEIKLK TFSPELQGKA VFVVVNACSS KDYSNNIVGV CFVGQDVTGQ KIVMDKFINI QGDYKAIVHS PNPLIPPIFA
0801: ADENTCCLEW NTALEKLTGW SRSEVIGKML VGEVFGSYCR LKGPDALTKF MIVLHNAIGG QETDKFPFPF FDRNGKFVQA LLTANKRVSF DGKVIGAFCF
0901: LQIPSPELQQ ALTVQRRQDT ECFTKAKELA YICQVVKNPL SGLRFTNSLL EATDLNENQK QLLETSVSCE KQISRIVSDM DLERIEDGSF ELVRTEFLLG
1001: SVINAIVSQA MFLLKERGVQ LIRDIPEEIK SIQVYGDQTR IQQLLAEFLL SIIRYAPSHE WVEIHISHVP KQMADGFYAI RTEFRMVCPG EGLPPELVRD
1101: MFHSSRWTIP EGLGLSVCRR ILKLMNGEVQ YIRESERSYF LIILGLPVPM KRPLSTASGS GDMMLMMP

Best Arabidopsis Sequence Match ( AT2G18790.1 )
(BLAST)

0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY

Arabidopsis Description

PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.