CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	60.21	93.44
CDX98668	Canola	plastid	88.38	90.61
CDX94002	Canola	plastid	88.73	89.05
CDX78988	Canola	plastid	93.31	87.75
CDY54570	Canola	plastid	89.44	81.41
CDY31442	Canola	plastid	89.08	81.09
CDY49022	Canola	plastid	92.61	76.68
CDY49485	Canola	plastid	92.25	76.61
Bra013458.1-P	Field mustard	plastid	98.59	59.57
AT4G20360.1	Thale cress	plastid	94.37	56.3
KRH03857	Soybean	plastid	82.75	52.57
Solyc06g071790.2.1	Tomato	nucleus, plastid	82.04	51.78
KRH57147	Soybean	plastid	85.92	50.94
VIT_17s0000g09370.t01	Wine grape	plastid	85.56	50.0
PGSC0003DMT400092196	Potato	plastid	82.39	49.06
Solyc03g112150.1.1	Tomato	plastid	82.04	48.85
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	81.69	48.64
Zm00001d017092_P001	Maize	plastid	78.17	47.74
Os02t0595700-01	Rice	plastid	78.17	47.54
TraesCS6B01G238600.1	Wheat	plastid	78.17	47.44
Zm00001d050969_P001	Maize	plastid	77.82	47.42
TraesCS6D01G193000.1	Wheat	nucleus, plastid	78.17	47.23
TraesCS6A01G209800.1	Wheat	plastid	78.17	47.23
EES05366	Sorghum	plastid	77.11	47.0
HORVU6Hr1G053680.5	Barley	plastid	78.17	43.19
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	39.79	36.1
CDX90912	Canola	mitochondrion	57.04	35.76
CDY22085	Canola	mitochondrion	57.04	35.6
CDY17978	Canola	mitochondrion	56.69	35.54
CDY21923	Canola	mitochondrion	56.69	35.31
CDY62618	Canola	endoplasmic reticulum, mitochondrion	38.38	29.22
CDX70032	Canola	cytosol	23.59	19.48
CDY06290	Canola	cytosol	7.39	18.26
CDY69678	Canola	cytosol	7.39	18.26
CDY06288	Canola	cytosol	7.39	18.26
CDY67376	Canola	cytosol	7.39	18.26
CDY22711	Canola	cytosol	25.0	16.63
CDY22710	Canola	cytosol	25.0	16.63
CDY10804	Canola	cytosol	24.3	16.12
CDY61938	Canola	cytosol	24.3	16.12
CDY09211	Canola	cytosol	24.3	16.12
CDY34479	Canola	cytosol	24.3	16.12
CDX95108	Canola	cytosol, extracellular	27.46	16.02
CDX88757	Canola	cytosol	22.54	15.96
CDX93604	Canola	cytosol	24.3	15.0
CDY67375	Canola	cytosol	13.03	13.31
CDY58828	Canola	cytosol	25.0	12.5
CDY06289	Canola	cytosol	10.56	11.72
CDX78392	Canola	cytosol	25.7	11.62
CDX96737	Canola	cytosol	20.77	11.39
CDX70362	Canola	cytosol	26.06	11.37
CDX85751	Canola	cytosol	27.82	11.06
CDX83874	Canola	endoplasmic reticulum	20.07	11.0
CDY40108	Canola	cytosol	27.11	10.71
CDY19192	Canola	cytosol	19.72	10.31
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	20.77	10.1
CDY21721	Canola	cytosol	20.42	10.07
CDY26187	Canola	golgi, vacuole	19.72	9.57
CDY09214	Canola	cytosol	4.93	8.75
CDY06287	Canola	cytosol	6.34	7.93
CDY61091	Canola	cytosol	3.52	7.46

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	GO:A0A078D687	EnsemblPlants:CDX82758	ProteinID:CDX82758	ProteinID:CDX82758.1
InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
EnsemblPlantsGene:GSBRNA2T00138076001	InterPro:G_TR_CS	PFAM:PF03143	PFAM:PF03144	ScanProsite:PS00301	PANTHER:PTHR43721
PANTHER:PTHR43721:SF13	SUPFAM:SSF50447	SUPFAM:SSF50465	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C
UniParc:UPI0004EF114D	SEG:seg	:	:	:	:

Description

BnaC01g12080D

Coordinates

chrLK031830:+:26457..28061

Molecular Weight (calculated)

30758.3 Da

IEP (calculated)

6.556

GRAVY (calculated)

-0.030

Length

284 amino acids

Sequence
(BLAST)

001: MAISSPAYSR LICSYSSPSP SPSLSPAIST STTLTAALTM ALASMGNSVA KKYDEIDAAP EERARGITIN TATIYELMDA VDSYIPIPQR QTELPFLLAV
101: EDVFSITGRG TVATGRVERG TVKVGETVDL VGLRETRNYT VTGVEMFQKI LDEALAGDNV GLLLRGIQKA DIQRGMVLAK PGSITPHTKF EAIVYVLKKE
201: EGGRHSPFFA GYRPQFYMRT TDVTGKVTKI MNDKDEESKM VMPGDRVKIV VELIVPVACE QGMRFAIREG GKTVGAGVIQ SIIE

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.