CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49022	Canola	plastid	98.25	97.96
GSMUA_AchrUn_...	Banana	cytosol	49.42	92.35
CDX82758	Canola	plastid	76.61	92.25
CDX98668	Canola	plastid	73.1	90.25
CDX94002	Canola	plastid	73.98	89.4
CDX78988	Canola	plastid	78.66	89.07
CDY54570	Canola	plastid	79.24	86.86
CDY31442	Canola	plastid	78.66	86.22
Bra033753.1-P	Field mustard	plastid	97.95	70.68
Solyc06g071790.2.1	Tomato	nucleus, plastid	79.24	60.22
KRH03857	Soybean	plastid	77.49	59.28
KRH57147	Soybean	plastid	80.7	57.62
VIT_17s0000g09370.t01	Wine grape	plastid	81.87	57.61
Solyc03g112150.1.1	Tomato	plastid	80.12	57.44
PGSC0003DMT400092196	Potato	plastid	79.53	57.02
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	79.24	56.81
Zm00001d017092_P001	Maize	plastid	74.85	55.05
TraesCS6B01G238600.1	Wheat	plastid	74.85	54.7
TraesCS6A01G209800.1	Wheat	plastid	75.15	54.68
TraesCS6D01G193000.1	Wheat	nucleus, plastid	75.15	54.68
Os02t0595700-01	Rice	plastid	74.56	54.6
Zm00001d050969_P001	Maize	plastid	74.27	54.51
EES05366	Sorghum	plastid	73.98	54.29
HORVU6Hr1G053680.5	Barley	plastid	75.15	50.0
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	42.69	46.65
CDY22085	Canola	mitochondrion	54.68	41.1
CDX90912	Canola	mitochondrion	54.39	41.06
CDY17978	Canola	mitochondrion	54.09	40.84
CDY21923	Canola	mitochondrion	53.8	40.35
CDY62618	Canola	endoplasmic reticulum, mitochondrion	31.87	29.22
CDX70032	Canola	cytosol	19.59	19.48
CDY22711	Canola	cytosol	23.1	18.5
CDY22710	Canola	cytosol	23.1	18.5
CDY06288	Canola	cytosol	6.14	18.26
CDY67376	Canola	cytosol	6.14	18.26
CDY69678	Canola	cytosol	6.14	18.26
CDY06290	Canola	cytosol	6.14	18.26
CDY34479	Canola	cytosol	22.51	17.99
CDY61938	Canola	cytosol	22.51	17.99
CDY10804	Canola	cytosol	22.51	17.99
CDY09211	Canola	cytosol	22.51	17.99
CDX88757	Canola	cytosol	21.05	17.96
CDX95108	Canola	cytosol, extracellular	24.85	17.45
CDX93604	Canola	cytosol	22.81	16.96
CDY67375	Canola	cytosol	13.16	16.19
CDY06289	Canola	cytosol	11.4	15.23
CDY09214	Canola	cytosol	6.73	14.38
CDY58828	Canola	cytosol	23.1	13.91
CDX96737	Canola	cytosol	21.05	13.9
CDX83874	Canola	endoplasmic reticulum	20.76	13.71
CDY19192	Canola	cytosol	20.76	13.08
CDY21721	Canola	cytosol	21.64	12.85
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	21.93	12.84
CDX78392	Canola	cytosol	23.1	12.58
CDX70362	Canola	cytosol	23.68	12.44
CDY26187	Canola	golgi, vacuole	20.76	12.14
CDX85751	Canola	cytosol	24.85	11.9
CDY06287	Canola	cytosol	7.89	11.89
CDY40108	Canola	cytosol	24.27	11.54
CDY61091	Canola	cytosol	2.92	7.46

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:A0A078IF17	UniProt:A0A078IF17	EnsemblPlants:CDY49485
ProteinID:CDY49485	ProteinID:CDY49485.1	InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00093146001
InterPro:G_TR_CS	InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144
PRINTS:PR00315	ScanProsite:PS00301	PANTHER:PTHR43721	PANTHER:PTHR43721:SF13	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0004EE9ED4
SEG:seg	:	:	:	:	:

Description

BnaC07g18140DBnaC07g18140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IF17]

Coordinates

chrLK032836:+:47929..49568

Molecular Weight (calculated)

37169.0 Da

IEP (calculated)

9.555

GRAVY (calculated)

-0.092

Length

342 amino acids

Sequence
(BLAST)

001: MAFSSPAATC SSIRLLYSPY AASPSSSPSP TISLTLSSSF LPSFTSLSVP TSYPHPLRRA FTVRAARGKF ERKKPHVNIG TIGHVDHGKT TLTAALTMTL
101: ASMGNSVAKK YDEIDAAPEE RARGITINTA TIYELMDSVD SYIPIPTRQT DLPFLLAVED VFSITGRGTV ATGRVERGTV KVGETVDLVG LRETRNYTVT
201: GVEMFQKILD EAMAGDNVGL LLRGIQKADI QRGMVLAKPG SITPHTKFEA IVYVLKKEEG GRHSPFFAGY RPQFYMRTTD VTGKVTKIMN DKDEESKMVM
301: PGDRVKIVVE LIVPVACEQG MRFAIREGGK TVGAGVIQTI LE

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.