CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03857	Soybean	plastid	83.72	89.71
CDX82758	Canola	plastid	50.94	85.92
KRH54307	Soybean	mitochondrion, plastid	85.39	85.39
KRH63638	Soybean	endoplasmic reticulum, nucleus, plastid	84.97	84.79
Bra013458.1-P	Field mustard	plastid	82.46	84.04
Solyc03g112150.1.1	Tomato	plastid	83.51	83.86
Bra038805.1-P	Field mustard	plastid	83.09	83.79
CDX98668	Canola	plastid	48.43	83.75
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	82.88	83.23
Bra033753.1-P	Field mustard	plastid	82.05	82.91
PGSC0003DMT400092196	Potato	plastid	82.05	82.39
AT4G20360.1	Thale cress	plastid	81.84	82.35
Solyc06g071790.2.1	Tomato	nucleus, plastid	77.24	82.22
Bra020926.1-P	Field mustard	plastid	73.28	82.2
CDX94002	Canola	plastid	48.43	81.98
CDX78988	Canola	plastid	51.15	81.13
CDY49022	Canola	plastid	58.04	81.05
CDY54570	Canola	plastid	52.61	80.77
CDY49485	Canola	plastid	57.62	80.7
CDY31442	Canola	plastid	51.98	79.81
KRH33293	Soybean	plastid	35.07	71.49
KRG95471	Soybean	nucleus	56.58	59.96
KRH67153	Soybean	nucleus	56.16	59.25
KRH20931	Soybean	mitochondrion	54.49	58.0
KRH11356	Soybean	mitochondrion	45.3	52.54
KRG93959	Soybean	nucleus	26.72	28.64
KRH58241	Soybean	nucleus	26.72	28.64
KRH07098	Soybean	cytosol, mitochondrion, nucleus	26.51	28.41
KRH57863	Soybean	nucleus	26.3	28.19
KRH04781	Soybean	endoplasmic reticulum	26.1	27.96
KRH34904	Soybean	nucleus	26.1	27.9
KRH41785	Soybean	cytosol, nucleus	24.84	23.61
KRH60492	Soybean	cytosol	24.84	23.56
KRH42938	Soybean	cytosol	26.51	16.14
KRH59057	Soybean	cytosol	26.1	15.76

Protein Annotations

EntrezGene:100791320	MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EMBL:ACUP02002814	InterPro:EFTU_2
InterPro:EFTu-like_2	EnsemblPlantsGene:GLYMA_05G041900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	UniProt:K7KMT9	ProteinID:KRH57146.1
EnsemblPlants:KRH57147	ProteinID:KRH57147	ProteinID:KRH57147.1	HAMAP:MF_00118_B	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43721
PANTHER:PTHR43721:SF6	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org
UniParc:UPI000233A410	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:3752817..3755142

Molecular Weight (calculated)

52510.3 Da

IEP (calculated)

6.805

GRAVY (calculated)

-0.168

Length

479 amino acids

Sequence
(BLAST)

001: MAISWAAATT SKLAYPPHVH FSPSPSSNYL FLKTHKPSAT HLSSSFIHPT TILHLAAANT TTRRRSFTVR AARGKFERKK PHVNIGTIGH VDHGKTTLTA
101: ALTMALASLG NSAPKKYDEI DAAPEERARG ITINTATVEY ETENRHYAHV DCPGHADYVK NMITGAAQMD GAILVVSGAD GPMPQTKEHI LLAKQVGVPN
201: IVVFLNKQDQ VDDEELLQLV ELEVRELLSK YEFPGDDVPI ISGSALLSLE ALMANPAIKR GENQWVDKIY ELMEAVDDYI PIPQRQTELP FLLAIEDVFT
301: ITGRGTVATG RVERGTIRVG ETVDIVGVKE TRNTTVTGVE MFQKILDEAL AGDNVGLLLR GIQKTDIQRG MVLAKPGTIT PHTKFSAIVY VLKKEEGGRH
401: SPFFSGYRPQ FYMRTTDVTG KVTEIMNDKD EESKMVMPGD RVKLVVELIV PVACEQGMRF AIREGGKTVG AGVIQSIIE

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.