CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54307	Soybean	mitochondrion, plastid	96.25	96.45
GSMUA_AchrUn_...	Banana	cytosol	35.21	92.35
KRH57147	Soybean	plastid	84.79	84.97
VIT_17s0000g09370.t01	Wine grape	plastid	85.83	84.77
KRH03857	Soybean	plastid	77.08	82.77
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	51.67	79.23
KRH33293	Soybean	plastid	37.92	77.45
KRG95471	Soybean	nucleus	56.46	59.96
KRH20931	Soybean	mitochondrion	55.83	59.56
KRH67153	Soybean	nucleus	56.04	59.25
KRH11356	Soybean	mitochondrion	46.25	53.75
KRH58241	Soybean	nucleus	26.88	28.86
KRG93959	Soybean	nucleus	26.88	28.86
KRH07098	Soybean	cytosol, mitochondrion, nucleus	26.46	28.41
KRH57863	Soybean	nucleus	26.46	28.41
KRH04781	Soybean	endoplasmic reticulum	26.25	28.19
KRH34904	Soybean	nucleus	26.04	27.9
KRH60492	Soybean	cytosol	23.75	22.57
KRH41785	Soybean	cytosol, nucleus	23.54	22.42
KRH59057	Soybean	cytosol	25.62	15.51
KRH42938	Soybean	cytosol	25.21	15.37

Protein Annotations

EntrezGene:100805960	MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EMBL:ACUP02002704	InterPro:EFTU_2
InterPro:EFTu-like_2	EnsemblPlantsGene:GLYMA_04G188700	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS
UniProt:I1JXC1	InterPro:IPR000795	EnsemblPlants:KRH63638	ProteinID:KRH63638	ProteinID:KRH63638.1	HAMAP:MF_00118_B
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301
PFscan:PS51722	PANTHER:PTHR43721	PANTHER:PTHR43721:SF6	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C
InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI000233A97A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:45946135..45948213

Molecular Weight (calculated)

52210.8 Da

IEP (calculated)

6.659

GRAVY (calculated)

-0.181

Length

480 amino acids

Sequence
(BLAST)

001: MAVSSASASS KLILFPHASS SSLISTPFRS STNTHKLSPL SSSFLHPTTV LRRTPSSTTT TTSPRRPLTV RAARGKFERK KPHVNIGTIG HVDHGKTTLT
101: AALTMALAAL GNSAPKKYDE IDAAPEERAR GITINTATVE YETENRHYAH VDCPGHADYV KNMITGAAQM DGAILVVSGA DGPMPQTKEH ILLAKQVGVP
201: NMVVFLNKQD QVDDEELLQL VELEVRDLLT SYEFPGDDTP IVSGSALLAL EALMANPAIK RGDNEWVDKI YKLMDEVDDY IPIPQRQTDL PFLLAVEDVF
301: SITGRGTVAT GRVERGTVKV GETVDLVGLR ETRNTTVTGV EMFQKILDEA LAGDNVGLLL RGVQKTDIQR GMVLAKPGTI TPHTKFSAIV YVLKKEEGGR
401: HSPFFAGYRP QFYMRTTDVT GKVTAITNDR DEESQMVMPG DRVKMVVELI VPVACEQGMR FAIREGGKTV GAGVIQSIIE

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.