CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60492	Soybean	cytosol	98.02	97.82
VIT_17s0000g02860.t01	Wine grape	plastid	79.17	76.88
HORVU2Hr1G012860.1	Barley	cytosol	74.01	76.59
AT1G18070.3	Thale cress	cytosol	80.75	74.95
Solyc06g069020.2.1	Tomato	cytosol, nucleus	79.37	74.91
CDY19192	Canola	cytosol	80.36	74.59
PGSC0003DMT400014425	Potato	cytosol	72.02	73.93
Os04t0270100-01	Rice	cytosol	65.67	70.73
EES10540	Sorghum	cytosol	75.4	70.63
CDY21721	Canola	cytosol	80.56	70.49
CDX96737	Canola	cytosol	72.42	70.46
TraesCS2A01G076700.1	Wheat	cytosol, golgi, nucleus	74.4	70.36
TraesCS2D01G075300.1	Wheat	cytosol	74.21	70.17
TraesCS2B01G091600.1	Wheat	cytosol	74.21	70.17
Zm00001d004172_P005	Maize	cytosol	75.0	69.87
GSMUA_Achr3P07900_001	Banana	cytosol	73.41	69.68
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	80.36	69.35
CDX83874	Canola	endoplasmic reticulum	71.23	69.31
CDY26187	Canola	golgi, vacuole	80.16	69.06
Os02t0456500-01	Rice	cytosol	32.94	64.09
Zm00001d025100_P005	Maize	cytosol	68.25	61.32
Bra016571.1-P	Field mustard	cytosol	71.63	50.92
KRG93959	Soybean	nucleus	32.34	36.47
KRH58241	Soybean	nucleus	32.34	36.47
KRH34904	Soybean	nucleus	31.94	35.94
KRH07098	Soybean	cytosol, mitochondrion, nucleus	31.75	35.79
KRH04781	Soybean	endoplasmic reticulum	31.35	35.35
KRH57863	Soybean	nucleus	31.35	35.35
KRG95471	Soybean	nucleus	23.21	25.89
KRH67153	Soybean	nucleus	23.21	25.77
KRH20931	Soybean	mitochondrion	22.62	25.33
KRH57147	Soybean	plastid	23.61	24.84
KRH63638	Soybean	endoplasmic reticulum, nucleus, plastid	22.42	23.54
KRH03857	Soybean	plastid	20.83	23.49
KRH54307	Soybean	mitochondrion, plastid	22.22	23.38
KRH11356	Soybean	mitochondrion	18.25	22.28
KRH33293	Soybean	plastid	10.32	22.13
KRH42938	Soybean	cytosol	32.34	20.71
KRH59057	Soybean	cytosol	32.34	20.55

Protein Annotations

MapMan:17.3.2.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EMBL:ACUP02004781	InterPro:EFTu-like_2	EnsemblPlantsGene:GLYMA_08G051200
GO:GO:0000166	GO:GO:0002184	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006412	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0018444
GO:GO:0019538	InterPro:G_TR_CS	UniProt:I1KQH1	InterPro:IPR000795	EnsemblPlants:KRH41785	ProteinID:KRH41785
ProteinID:KRH41785.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF36	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI00023C59B9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:3980934..3992202

Molecular Weight (calculated)

56295.7 Da

IEP (calculated)

4.897

GRAVY (calculated)

-0.359

Length

504 amino acids

Sequence
(BLAST)

001: MDIEEDIRSL QLDSAEDNNG VVNPEDGKPE EVEKYDKMDE DPKQEVEAEP KAVEAEPKVK DKEIPSVQDE EDVPEMTKRH LNVVFIGHVD AGKSTTGGQI
101: LFLSGQVDER TIQKYEKEAK DKSRESWYMA YIMDTNEEER VKGKTVEVGR AHFETETTRF TILDAPGHKS YVPNMISGAS QADIGVLVIS ARKGEFETGY
201: ERGGQTREHV QLAKTLGVSK LLVVVNKMDE PTVQWSKERY DEIESKMVPF LKQSGYNVKK DVLFLPISGL MGANMKTRVD KSVCPWWNGP CLFEALDAIE
301: VPLRDPKGPF RMPIIDKFKD MGTVVMGKVE SGSVREGDSL LVMPNKDQVK VVAIFIDEDR VKRAGPGENL RIRLSGVEDE DILSGFVLSS VANPIPAVTE
401: FVAQLVILEL LDNAIFTAGY KAVLHIHSVV EECEIVELLQ QIDTKTKKPM KKKVLFVKNG AVVMCRVQVN NSICIEKFSD FPQLGRFTLR TEGKTVAVGK
501: VTGL

Best Arabidopsis Sequence Match ( AT1G18070.1 )
(BLAST)

001: MDLEAEIRAL QLESADENNG VVIPEVHNSH EVENLDKAPE DLKDEVQESI PVPDEQEASE DHDEVMLHPV HNPAKAKEKA AQEKAAKEEA EDVAEANKKR
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRMPIIDKFK DMGTVVMGKV ESGSIREGDS LVVMPNKEQV KVVAIYCDED KVKRAGPGEN LRVRITGIED
401: EDILSGFVLS SIVNPVPAVT EFVAQLQILE LLDNAIFTAG YKAILHIHAV VEECEIIELK SQIDLKTRKP MKKKVLFVKN GAAVVCRIQV TNSICIEKFS
501: DFPQLGRFTL RTEGKTIAVG KVTELLSSVS SA

Arabidopsis Description

T10F20.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.