CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96737	Canola	cytosol	85.91	85.91
CDY19192	Canola	cytosol	85.52	81.58
AT1G18070.3	Thale cress	cytosol	82.82	79.01
CDY21721	Canola	cytosol	85.52	76.91
CDY26187	Canola	golgi, vacuole	86.49	76.58
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	86.29	76.54
KRH60492	Soybean	cytosol	69.88	71.68
KRH41785	Soybean	cytosol, nucleus	69.31	71.23
HORVU2Hr1G012860.1	Barley	cytosol	63.51	67.56
VIT_17s0000g02860.t01	Wine grape	plastid	66.8	66.67
Solyc06g069020.2.1	Tomato	cytosol, nucleus	67.18	65.17
PGSC0003DMT400014425	Potato	cytosol	61.58	64.97
GSMUA_Achr3P07900_001	Banana	cytosol	66.02	64.41
Os04t0270100-01	Rice	cytosol	55.98	61.97
Os02t0456500-01	Rice	cytosol	30.89	61.78
EES10540	Sorghum	cytosol	63.9	61.52
Zm00001d004172_P005	Maize	cytosol	63.9	61.18
TraesCS2D01G075300.1	Wheat	cytosol	62.74	60.98
TraesCS2B01G091600.1	Wheat	cytosol	62.74	60.98
TraesCS2A01G076700.1	Wheat	cytosol, golgi, nucleus	62.55	60.79
Zm00001d025100_P005	Maize	cytosol	57.14	52.76
CDY06287	Canola	cytosol	19.69	44.93
CDY06289	Canola	cytosol	21.04	42.58
CDY09214	Canola	cytosol	13.13	42.5
CDY67375	Canola	cytosol	21.81	40.65
CDX88757	Canola	cytosol	27.03	34.91
CDY34479	Canola	cytosol	28.38	34.35
CDY61938	Canola	cytosol	28.38	34.35
CDY09211	Canola	cytosol	28.38	34.35
CDY10804	Canola	cytosol	28.38	34.35
CDY22711	Canola	cytosol	28.19	34.19
CDY22710	Canola	cytosol	28.19	34.19
CDX93604	Canola	cytosol	28.38	31.96
CDX95108	Canola	cytosol, extracellular	29.34	31.21
CDY61091	Canola	cytosol	7.92	30.6
CDX70032	Canola	cytosol	18.53	27.91
CDY58828	Canola	cytosol	28.19	25.7
CDX90912	Canola	mitochondrion	21.62	24.72
CDY22085	Canola	mitochondrion	21.62	24.62
CDY21923	Canola	mitochondrion	21.62	24.56
CDX78392	Canola	cytosol	29.73	24.52
CDY17978	Canola	mitochondrion	21.43	24.5
CDX70362	Canola	cytosol	29.34	23.35
CDX85751	Canola	cytosol	29.15	21.15
CDY40108	Canola	cytosol	29.15	21.0
CDY49022	Canola	plastid	13.9	20.99
CDY69678	Canola	cytosol	4.63	20.87
CDY67376	Canola	cytosol	4.63	20.87
CDY06288	Canola	cytosol	4.63	20.87
CDY06290	Canola	cytosol	4.63	20.87
CDY49485	Canola	plastid	13.71	20.76
CDX82758	Canola	plastid	11.0	20.07
CDX98668	Canola	plastid	10.62	19.86
CDY54570	Canola	plastid	11.78	19.55
CDX94002	Canola	plastid	10.62	19.43
CDY31442	Canola	plastid	11.58	19.23
CDX78988	Canola	plastid	10.81	18.54
CDY62618	Canola	endoplasmic reticulum, mitochondrion	11.2	15.55

Protein Annotations

MapMan:17.3.2.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:A0A078D699	EnsemblPlants:CDX83874	ProteinID:CDX83874
ProteinID:CDX83874.1	ncoils:Coil	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00139645001	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF36	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TMHMM:TMhelix	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C
UniParc:UPI0004EED9D1	SEG:seg	:	:	:	:

Description

BnaC08g17710D

Coordinates

chrLK031834:+:926637..930277

Molecular Weight (calculated)

57297.8 Da

IEP (calculated)

5.864

GRAVY (calculated)

-0.255

Length

518 amino acids

Sequence
(BLAST)

001: MGVPRYFVCA IYVPHDIFSV LYILFINYVD LEAEIRALQL DSADLKDNVQ ESAPVPVEKQ ATEDHDQEIL LPVHNPAKAK EKAAQEKAAK EEAEEEAEAN
101: KKRHLNAVFI GHVDAGKSTI GGQILFLSGQ VDDRQIQKYD EKEAKDESRE SWYMAYIMDT NEEERAKGKT VEVGRAHFET ESTRFTLLDA PGHKSYVPNM
201: ISGASQADIG VLVISARKGE FETGFEKGGQ TREHVQLAKT LGVSKLVVVV NKMDDPTVNW SKERYDEIEQ KMVPFLKSSS YNTKKDVIFL PISGLIMGVN
301: MDKRMDRNVC PWYSGPSFFE VLDSIEVPPR DNGPFRMPII DKFKDMGTIV MGKVESGSIK EGDSLIIMPN KEPVKVVAIY CDEDKVKHAG PGENLRVRIT
401: GIEDEDILSG FVISSTVKPV PAVTEFVAQL QIIGLPEKAV LTAGYKAILH IHAVPMKNKG VRFVKNGAGV VCRIQVTNSI CVEKFSDFPQ LGRFTLRTEG
501: KTVAVGKVTA LSGASSSA

Best Arabidopsis Sequence Match ( AT1G18070.1 )
(BLAST)

001: MDLEAEIRAL QLESADENNG VVIPEVHNSH EVENLDKAPE DLKDEVQESI PVPDEQEASE DHDEVMLHPV HNPAKAKEKA AQEKAAKEEA EDVAEANKKR
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRMPIIDKFK DMGTVVMGKV ESGSIREGDS LVVMPNKEQV KVVAIYCDED KVKRAGPGEN LRVRITGIED
401: EDILSGFVLS SIVNPVPAVT EFVAQLQILE LLDNAIFTAG YKAILHIHAV VEECEIIELK SQIDLKTRKP MKKKVLFVKN GAAVVCRIQV TNSICIEKFS
501: DFPQLGRFTL RTEGKTIAVG KVTELLSSVS SA

Arabidopsis Description

T10F20.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.