CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26187	Canola	golgi, vacuole	97.42	90.43
AT1G18070.3	Thale cress	cytosol	87.29	87.29
CDX83874	Canola	endoplasmic reticulum	81.58	85.52
CDY21721	Canola	cytosol	89.87	84.72
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	90.06	83.73
CDX96737	Canola	cytosol	79.01	82.82
KRH41785	Soybean	cytosol, nucleus	74.59	80.36
KRH60492	Soybean	cytosol	74.59	80.2
HORVU2Hr1G012860.1	Barley	cytosol	66.11	73.72
VIT_17s0000g02860.t01	Wine grape	plastid	69.24	72.45
Solyc06g069020.2.1	Tomato	cytosol, nucleus	70.9	72.1
PGSC0003DMT400014425	Potato	cytosol	63.17	69.86
GSMUA_Achr3P07900_001	Banana	cytosol	67.59	69.11
EES10540	Sorghum	cytosol	67.77	68.4
Os04t0270100-01	Rice	cytosol	58.75	68.16
TraesCS2B01G091600.1	Wheat	cytosol	66.11	67.35
TraesCS2D01G075300.1	Wheat	cytosol	66.11	67.35
TraesCS2A01G076700.1	Wheat	cytosol, golgi, nucleus	65.93	67.17
Zm00001d004172_P005	Maize	cytosol	66.85	67.1
Os02t0456500-01	Rice	cytosol	30.76	64.48
Zm00001d025100_P005	Maize	cytosol	60.59	58.65
CDY06287	Canola	cytosol	18.42	44.05
CDY09214	Canola	cytosol	12.71	43.12
CDY06289	Canola	cytosol	19.52	41.41
CDY67375	Canola	cytosol	20.26	39.57
CDX88757	Canola	cytosol	25.97	35.16
CDY10804	Canola	cytosol	27.26	34.58
CDY09211	Canola	cytosol	27.26	34.58
CDY34479	Canola	cytosol	27.26	34.58
CDY61938	Canola	cytosol	27.26	34.58
CDY22710	Canola	cytosol	26.89	34.19
CDY22711	Canola	cytosol	26.89	34.19
CDX93604	Canola	cytosol	27.26	32.17
CDX95108	Canola	cytosol, extracellular	28.18	31.42
CDY61091	Canola	cytosol	7.37	29.85
CDX70032	Canola	cytosol	17.86	28.2
CDY58828	Canola	cytosol	26.89	25.7
CDX78392	Canola	cytosol	29.47	25.48
CDX70362	Canola	cytosol	29.28	24.42
CDY67376	Canola	cytosol	5.16	24.35
CDY69678	Canola	cytosol	5.16	24.35
CDY06288	Canola	cytosol	5.16	24.35
CDY06290	Canola	cytosol	5.16	24.35
CDY22085	Canola	mitochondrion	19.89	23.74
CDY21923	Canola	mitochondrion	19.89	23.68
CDX90912	Canola	mitochondrion	19.71	23.62
CDY17978	Canola	mitochondrion	19.52	23.4
CDY40108	Canola	cytosol	30.02	22.67
CDX85751	Canola	cytosol	29.65	22.55
CDY49022	Canola	plastid	13.26	20.99
CDY49485	Canola	plastid	13.08	20.76
CDX82758	Canola	plastid	10.31	19.72
CDX98668	Canola	plastid	9.94	19.49
CDY54570	Canola	plastid	11.05	19.23
CDX94002	Canola	plastid	9.94	19.08
CDY31442	Canola	plastid	10.87	18.91
CDX78988	Canola	plastid	10.13	18.21
CDY62618	Canola	endoplasmic reticulum, mitochondrion	9.76	14.21

Protein Annotations

MapMan:17.3.2.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:A0A078G2F1	UniProt:A0A078G2F1	EnsemblPlants:CDY19192
ProteinID:CDY19192	ProteinID:CDY19192.1	ncoils:Coil	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00006488001
InterPro:G_TR_CS	InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF36	SUPFAM:SSF50447
SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C
UniParc:UPI0004EF397E	SEG:seg	:	:	:	:

Description

BnaC05g13930DBnaC05g13930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2F1]

Coordinates

chrLK032093:-:74010..79160

Molecular Weight (calculated)

60045.9 Da

IEP (calculated)

5.057

GRAVY (calculated)

-0.316

Length

543 amino acids

Sequence
(BLAST)

001: MLSGVLRIYL DIEADIRALQ LDSAEENNGV GVVIPTDQNS DGVEIVDKMD EDLKDEVQES VPAPDVQQAP EDHDQEILHP VHNPAKAKEK AAQEKAAKEE
101: AEEEAEANKK RHLNVVFIGH VDAGKSTIGG QILFLSGQVD DRQIQKYEKE AKEKSRESWY MAYIMDTNEE ERAKGKTVEV GRAHFETETT RFTILDAPGH
201: KSYVPNMISG ASQADIGVLV ISARKGEFET GYERGGQTRE HVQLAKTLGV SKLVVVVNKM DDPTVNWSKE RYDEIEQKMV PFLKSSGYNT KKDVIFLPIS
301: GLMGTNIDKS MDRNVCPWFS GPSFFEVLNA IEVPPRDPNG PFRMPIIDKF KDMGTVVMGK VESGSIREGD SLIVMPNKEH AKVVAIYCDE DKVKRAGPGE
401: NLRVRITGIE DEDILAGFVL SSTVKPVPAV TEFVAQLQIL ELLDNAIFTA GYKAILHIHA VVEECEIIEL ISQIDMKTRK PMKKKILFVK NGAAVVCRIQ
501: VSNSICVEKF SDFPQLGRFT LRTEGKTIAV GKVTALSGAS SSA

Best Arabidopsis Sequence Match ( AT1G18070.1 )
(BLAST)

001: MDLEAEIRAL QLESADENNG VVIPEVHNSH EVENLDKAPE DLKDEVQESI PVPDEQEASE DHDEVMLHPV HNPAKAKEKA AQEKAAKEEA EDVAEANKKR
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRMPIIDKFK DMGTVVMGKV ESGSIREGDS LVVMPNKEQV KVVAIYCDED KVKRAGPGEN LRVRITGIED
401: EDILSGFVLS SIVNPVPAVT EFVAQLQILE LLDNAIFTAG YKAILHIHAV VEECEIIELK SQIDLKTRKP MKKKVLFVKN GAAVVCRIQV TNSICIEKFS
501: DFPQLGRFTL RTEGKTIAVG KVTELLSSVS SA

Arabidopsis Description

T10F20.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.