Factsheet for Zm00001d025100_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10540	Sorghum	cytosol	83.24	86.8
Zm00001d004172_P005	Maize	cytosol	82.89	85.95
HORVU2Hr1G012860.1	Barley	cytosol	70.77	81.52
Solyc03g118990.1.1	Tomato	cytosol	9.8	78.57
TraesCS2D01G075300.1	Wheat	cytosol	73.8	77.67
TraesCS2B01G091600.1	Wheat	cytosol	73.62	77.49
TraesCS2A01G076700.1	Wheat	cytosol, golgi, nucleus	73.62	77.49
Os04t0270100-01	Rice	cytosol	63.46	76.07
GSMUA_Achr3P07900_001	Banana	cytosol	66.84	70.62
KRH41785	Soybean	cytosol, nucleus	61.32	68.25
KRH60492	Soybean	cytosol	61.14	67.92
VIT_17s0000g02860.t01	Wine grape	plastid	60.07	64.93
PGSC0003DMT400014425	Potato	cytosol	55.26	63.14
CDY19192	Canola	cytosol	58.65	60.59
AT1G18070.3	Thale cress	cytosol	58.47	60.41
CDX96737	Canola	cytosol	54.72	59.27
CDX83874	Canola	endoplasmic reticulum	52.76	57.14
CDY21721	Canola	cytosol	58.47	56.94
CDY26187	Canola	golgi, vacuole	58.65	56.24
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	58.11	55.82
Bra016571.1-P	Field mustard	cytosol	54.19	42.88
Zm00001d037882_P001	Maize	cytosol	13.19	40.0
Zm00001d036904_P001	Maize	cytosol	27.09	34.0
Zm00001d009870_P008	Maize	cytosol	27.27	33.92
Zm00001d037873_P010	Maize	cytosol	27.27	33.92
Zm00001d006596_P001	Maize	cytosol	26.92	33.78
Zm00001d046449_P003	Maize	cytosol	26.92	33.78
Zm00001d021788_P001	Maize	cytosol, extracellular, plasma membrane, plastid	26.92	33.78
Zm00001d009868_P015	Maize	cytosol	27.09	33.7
Zm00001d037905_P010	Maize	cytosol	27.09	33.7
Zm00001d037877_P014	Maize	cytosol	27.09	33.7
Zm00001d037875_P014	Maize	cytosol	27.09	33.7
Zm00001d009887_P001	Maize	cytosol	8.56	32.88
Zm00001d050969_P001	Maize	plastid	20.32	24.46
Zm00001d017092_P001	Maize	plastid	20.14	24.3
Zm00001d034856_P003	Maize	mitochondrion	18.0	22.35
Zm00001d001827_P005	Maize	cytosol	27.09	21.87
Zm00001d012846_P005	Maize	mitochondrion	16.76	20.7
Zm00001d040673_P001	Maize	mitochondrion	4.1	20.18
Zm00001d026213_P001	Maize	cytosol	27.09	18.31

Protein Annotations

EntrezGene:100384492	MapMan:17.3.2.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:A0A1D6J4Q5	ProteinID:AQK42946.1
InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0006412
GO:GO:0006413	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF36
SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C
InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0008456709	EnsemblPlantsGene:Zm00001d025100	EnsemblPlants:Zm00001d025100_P005	EnsemblPlants:Zm00001d025100_T005	SEG:seg

Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein

Coordinates

chr10:-:104005267..104026749

Molecular Weight (calculated)

61984.5 Da

IEP (calculated)

6.178

GRAVY (calculated)

-0.209

Length

561 amino acids

Sequence
(BLAST)

001: MEHDAHAEAS SHAVPPPEDA TVDDWARDDA EPMSVESSAT PPEVAAVDSG ADTPPAPSAS AAVAGEGVKE IQSSLQSLEL KTNEDAHVVE DDVEETKRHL
101: NVVFIGHVDA GKSTTGGQIL FLSGQVDDRT IQKYEKEAKD KSRESCFNHA YDSFAYSFHV FRERLLKLVG PTLRQNTQDS LSWMHRYLFL LYVAYMLLMQ
201: GHKSYVPNMI SGASQADIGV LVISARKGEF ETGYERGGQT REHVLLAKTL GVAKLVVVIN KMDEPTVKWS KERYDEIEAK MVPFLKSSGY NVKKDVQFLP
301: ISGLVGTNMK TRMDKSICSW WDGPCLFEVL DRIVVPLRDP KGSVRMPIID KYKDMGTVAM GKIESGTIRE GDSLLVMPNK VFFAFPSYSH VKVIGLNLDE
401: SKVRRAGPAE NVRVKLSGVE EEDVMAGFVL SSVANPVGAV SEFIAQLQIL ELLDNAIFTA GYKAVLHIHS VVEECEIVEL IEEIGMKKKK EEDPKKKKPK
501: RKPLFVKNGA IVVCRIQVNN LICIEKFSDF PQLGRFTLRT EGKTVAVGKV VDIPPAGSPT F

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.