Factsheet for Zm00001d037873_P010

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005029_P001
Zm00001d052380_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	Zm00001d005029_P001	AT3G54220.1	19228333
AT1G07920.1	Zm00001d052380_P001	AT3G54220.1	19228333
AT1G07930.1	Zm00001d005029_P001	AT3G54220.1	19228333
AT1G07930.1	Zm00001d052380_P001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037875_P014	Maize	cytosol	99.78	99.78
Zm00001d037877_P014	Maize	cytosol	99.78	99.78
Zm00001d009870_P008	Maize	cytosol	99.56	99.56
GSMUA_Achr5P24440_001	Banana	cytosol	27.94	99.21
Zm00001d037905_P010	Maize	cytosol	99.11	99.11
Zm00001d009868_P015	Maize	cytosol	98.89	98.89
CDY09214	Canola	cytosol	35.03	98.75
Zm00001d046449_P003	Maize	cytosol	97.34	98.21
HORVU5Hr1G051280.1	Barley	cytosol	22.62	98.08
Os03t0177400-01	Rice	cytosol	97.12	97.99
Os03t0177500-01	Rice	cytosol	97.12	97.99
Os03t0177900-01	Rice	plasma membrane	97.12	97.99
Os03t0178000-02	Rice	cytosol	97.12	97.99
Zm00001d036904_P001	Maize	cytosol	97.12	97.99
KRG93959	Soybean	nucleus	96.9	97.76
KRH58241	Soybean	nucleus	96.67	97.54
KRH07098	Soybean	cytosol, mitochondrion, nucleus	96.45	97.32
Zm00001d037882_P001	Maize	cytosol	39.91	97.3
GSMUA_Achr10P...	Banana	cytosol	60.75	97.16
PGSC0003DMT400050663	Potato	cytosol	96.23	97.09
Solyc11g069700.1.1	Tomato	nucleus	96.01	96.87
HORVU4Hr1G056740.1	Barley	cytosol	95.57	96.42
TraesCS4B01G196900.1	Wheat	golgi	95.57	96.42
TraesCS4D01G197100.1	Wheat	cytosol	95.57	96.42
TraesCS4D01G197200.1	Wheat	cytosol	95.57	96.42
TraesCS5B01G418100.1	Wheat	cytosol	95.57	96.42
TraesCS5B01G418200.1	Wheat	cytosol	95.57	96.42
TraesCS5D01G423300.1	Wheat	cytosol	95.57	96.42
TraesCS5D01G423400.1	Wheat	cytosol	95.57	96.42
GSMUA_Achr10P...	Banana	cytosol	59.65	96.42
KRH34904	Soybean	nucleus	95.57	96.21
Solyc06g005060.2.1	Tomato	cytosol	95.57	96.21
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	95.57	96.21
KRH57863	Soybean	nucleus	95.34	96.2
PGSC0003DMT400020968	Potato	cytosol	95.34	96.2
VIT_06s0004g03240.t01	Wine grape	cytosol	95.34	96.2
GSMUA_Achr2P19000_001	Banana	cytosol	16.41	96.1
CDY06287	Canola	cytosol	48.34	96.04
TraesCS4A01G107600.1	Wheat	cytosol	95.12	95.97
TraesCS4A01G107700.1	Wheat	cytosol	95.12	95.97
TraesCS5A01G415400.1	Wheat	cytosol	95.12	95.97
TraesCS5A01G415600.1	Wheat	cytosol	95.12	95.97
Zm00001d006596_P001	Maize	cytosol	95.12	95.97
Zm00001d021788_P001	Maize	cytosol, extracellular, plasma membrane, plastid	95.12	95.97
Bra031601.1-P	Field mustard	cytosol	42.13	95.96
PGSC0003DMT400053547	Potato	cytosol	95.12	95.76
PGSC0003DMT400053553	Potato	cytosol	95.12	95.76
PGSC0003DMT400059830	Potato	cytosol	95.12	95.76
PGSC0003DMT400059832	Potato	cytosol	95.12	95.76
KRH04781	Soybean	endoplasmic reticulum	94.9	95.75
VIT_08s0040g02330.t01	Wine grape	cytosol	94.9	95.75
Solyc06g009960.1.1	Tomato	cytosol	86.92	95.61
AT1G07920.1	Thale cress	cytosol	94.68	95.1
AT1G07930.1	Thale cress	cytosol	94.68	95.1
AT1G07940.3	Thale cress	cytosol	94.68	95.1
AT5G60390.2	Thale cress	cytosol	94.68	95.1
CDY67375	Canola	cytosol	58.54	94.96
CDX88757	Canola	cytosol	84.26	94.76
Bra002483.1-P	Field mustard	cytosol	94.23	94.65
Bra018669.1-P	Field mustard	cytosol	94.23	94.65
Bra031602.1-P	Field mustard	cytosol	94.23	94.65
HORVU4Hr1G056830.1	Barley	cytosol	61.42	94.54
CDY06289	Canola	cytosol	53.66	94.53
Bra018242.1-P	Field mustard	cytosol	94.01	94.43
Bra020253.1-P	Field mustard	cytosol	94.01	94.43
CDY09211	Canola	cytosol	89.58	94.39
CDY10804	Canola	cytosol	89.58	94.39
CDY34479	Canola	cytosol	89.58	94.39
CDY61938	Canola	cytosol	89.58	94.39
Bra031605.1-P	Field mustard	cytosol	89.14	94.15
CDY22710	Canola	cytosol	89.14	94.15
CDY22711	Canola	cytosol	89.14	94.15
VIT_13s0019g03920.t01	Wine grape	cytosol	94.9	94.07
Bra006661.1-P	Field mustard	cytosol	93.35	93.76
Bra020251.1-P	Field mustard	cytosol	85.59	93.69
GSMUA_Achr6P04090_001	Banana	cytosol	40.58	92.89
HORVU5Hr1G100200.3	Barley	mitochondrion	95.57	92.89
HORVU5Hr1G100700.3	Barley	plasma membrane	95.57	92.69
HORVU6Hr1G085320.3	Barley	cytosol	88.91	90.93
CDY06288	Canola	cytosol	23.06	90.43
CDY06290	Canola	cytosol	23.06	90.43
CDY67376	Canola	cytosol	23.06	90.43
CDY69678	Canola	cytosol	23.06	90.43
Zm00001d009887_P001	Maize	cytosol	29.27	90.41
HORVU4Hr1G056820.1	Barley	plasma membrane	95.12	90.13
GSMUA_Achr3P17840_001	Banana	cytosol	30.16	89.47
GSMUA_AchrUn_...	Banana	cytosol	41.46	89.47
TraesCS4B01G196800.2	Wheat	golgi	95.57	89.23
HORVU6Hr1G085370.1	Barley	cytosol	88.69	88.5
CDX93604	Canola	cytosol	89.58	87.83
CDX70032	Canola	cytosol	66.74	87.5
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	79.16	87.5
CDX95108	Canola	cytosol, extracellular	94.23	87.27
TraesCS2D01G320300.1	Wheat	cytosol, nucleus, plastid	30.38	86.16
TraesCS2D01G320500.1	Wheat	cytosol	68.74	84.01
VIT_06s0004g03220.t01	Wine grape	cytosol	95.34	83.01
GSMUA_Achr10P...	Banana	cytosol, plastid	38.8	81.4
VIT_19s0014g04110.t01	Wine grape	cytosol	21.73	80.99
Bra030707.1-P	Field mustard	cytosol	94.23	72.03
CDY58828	Canola	cytosol	89.14	70.77
GSMUA_Achr6P02020_001	Banana	mitochondrion	52.33	68.21
Zm00001d004172_P005	Maize	cytosol	36.59	30.5
Zm00001d034856_P003	Maize	mitochondrion	27.94	27.88
Zm00001d025100_P005	Maize	cytosol	33.92	27.27
Zm00001d017092_P001	Maize	plastid	26.16	25.38
Zm00001d012846_P005	Maize	mitochondrion	25.5	25.33
Zm00001d050969_P001	Maize	plastid	26.16	25.32
Zm00001d040673_P001	Maize	mitochondrion	5.54	21.93
Zm00001d001827_P005	Maize	cytosol	33.7	21.87
Zm00001d026213_P001	Maize	cytosol	33.7	18.31

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:A0A1D6M1G2	ProteinID:AQK85083.1	InterPro:EFTu-like_2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301
PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C
UniParc:UPI000843E4F4	EnsemblPlantsGene:Zm00001d037873	EnsemblPlants:Zm00001d037873_P010	EnsemblPlants:Zm00001d037873_T010	SEG:seg	:

Description

elongation factor alpha3 elongation factor alpha3

Coordinates

chr6:-:140618468..140621370

Molecular Weight (calculated)

49647.3 Da

IEP (calculated)

9.584

GRAVY (calculated)

-0.288

Length

451 amino acids

Sequence
(BLAST)

001: MGKEKSHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKVCFQMD ATTPKYSKAR YDEIVKEVSS YLKKVGYNPD KIAFVPISGF
201: EGDNMIERST NLDWYKGPTL LEALDQITEP KRPSDKPLRL PLQDVYKIGG IGTVPVGRVE TGVIKPGMVV TFGPTGLTTE VKSVEMHHEA LQEALPGDNV
301: GFNVKNVAVK DLKRGFVASN SKDDPAKEAA SFTSQVIIMN HPGQIGNGYA PVLDCHTSHI AVKFAELITK IDRRSGKELE KEPKFLKNGD AGMVKMIPTK
401: PMVVETFSAY PPLGRFAVRD MRQTVAVGVI KSVEKKDPTG AKVTKAAAKK K

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.