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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 5
  • vacuole 1
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, vacuole
BaCelLo:cytosol
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913
msms PMID: 27780359 doi
G Mustafa, S Komatsu
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH00551
KRH40615

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G07920.1 KRH00551 AT3G54220.1 19228333
AT1G07920.1 KRH40615 AT3G54220.1 19228333
AT1G07930.1 KRH00551 AT3G54220.1 19228333
AT1G07930.1 KRH40615 AT3G54220.1 19228333
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH57863 Soybean nucleus 99.55 99.55
CDY09214 Canola cytosol 34.9 97.5
HORVU5Hr1G051280.1 Barley cytosol 22.6 97.12
KRH34904 Soybean nucleus 97.09 96.88
KRH07098 Soybean cytosol, mitochondrion, nucleus 96.87 96.87
Os03t0177400-01 Rice cytosol 96.64 96.64
Os03t0177500-01 Rice cytosol 96.64 96.64
Os03t0177900-01 Rice plasma membrane 96.64 96.64
Os03t0178000-02 Rice cytosol 96.64 96.64
KRG93959 Soybean nucleus 96.2 96.2
KRH58241 Soybean nucleus 96.2 96.2
GSMUA_Achr2P19000_001 Banana cytosol 16.55 96.1
PGSC0003DMT400020968 Potato cytosol 95.97 95.97
Solyc06g005060.2.1 Tomato cytosol 95.97 95.76
Solyc06g009970.2.1 Tomato extracellular, nucleus, plastid 95.97 95.76
Solyc11g069700.1.1 Tomato nucleus 95.75 95.75
VIT_06s0004g03240.t01 Wine grape cytosol 95.75 95.75
PGSC0003DMT400053547 Potato cytosol 95.75 95.54
PGSC0003DMT400053553 Potato cytosol 95.75 95.54
PGSC0003DMT400059830 Potato cytosol 95.75 95.54
PGSC0003DMT400059832 Potato cytosol 95.75 95.54
PGSC0003DMT400050663 Potato cytosol 95.53 95.53
Zm00001d046449_P003 Maize cytosol 95.53 95.53
Bra031601.1-P Field mustard cytosol 42.28 95.45
HORVU4Hr1G056740.1 Barley cytosol 95.3 95.3
KXG20293 Sorghum cytosol 95.3 95.3
KXG20294 Sorghum cytosol 95.3 95.3
KXG20296 Sorghum cytosol 95.3 95.3
KXG20299 Sorghum cytosol 95.3 95.3
TraesCS4B01G196900.1 Wheat golgi 95.3 95.3
TraesCS5B01G418100.1 Wheat cytosol 95.3 95.3
TraesCS5B01G418200.1 Wheat cytosol 95.3 95.3
Zm00001d036904_P001 Maize cytosol 95.3 95.3
CDY06287 Canola cytosol 48.32 95.15
Zm00001d037882_P001 Maize cytosol 39.37 95.14
Solyc06g009960.1.1 Tomato cytosol 87.25 95.12
Zm00001d037905_P010 Maize cytosol 95.97 95.12
CDY67375 Canola cytosol 59.06 94.96
Zm00001d009868_P015 Maize cytosol 95.75 94.9
Zm00001d009870_P008 Maize cytosol 95.75 94.9
Zm00001d037873_P010 Maize cytosol 95.75 94.9
TraesCS4A01G107600.1 Wheat cytosol 94.85 94.85
TraesCS4A01G107700.1 Wheat cytosol 94.85 94.85
TraesCS5A01G415400.1 Wheat cytosol 94.85 94.85
TraesCS5A01G415600.1 Wheat cytosol 94.85 94.85
Zm00001d037875_P014 Maize cytosol 95.53 94.68
Zm00001d037877_P014 Maize cytosol 95.53 94.68
AT1G07920.1 Thale cress cytosol 95.08 94.65
AT1G07930.1 Thale cress cytosol 95.08 94.65
AT1G07940.3 Thale cress cytosol 95.08 94.65
AT5G60390.2 Thale cress cytosol 95.08 94.65
Bra002483.1-P Field mustard cytosol 95.08 94.65
Bra018669.1-P Field mustard cytosol 95.08 94.65
Bra031602.1-P Field mustard cytosol 95.08 94.65
CDX88757 Canola cytosol 84.79 94.51
Bra018242.1-P Field mustard cytosol 94.85 94.43
Bra020253.1-P Field mustard cytosol 94.85 94.43
CDY09211 Canola cytosol 90.38 94.39
CDY10804 Canola cytosol 90.38 94.39
CDY34479 Canola cytosol 90.38 94.39
CDY61938 Canola cytosol 90.38 94.39
HORVU4Hr1G056830.1 Barley cytosol 61.74 94.2
Bra031605.1-P Field mustard cytosol 89.93 94.15
CDY22710 Canola cytosol 89.93 94.15
CDY22711 Canola cytosol 89.93 94.15
CDY06289 Canola cytosol 53.91 94.14
Bra020251.1-P Field mustard cytosol 86.58 93.93
Bra006661.1-P Field mustard cytosol 94.18 93.76
OQU75582 Sorghum cytosol 26.17 93.6
HORVU5Hr1G100200.3 Barley mitochondrion 95.3 91.81
HORVU5Hr1G100700.3 Barley plasma membrane 95.3 91.61
CDY06288 Canola cytosol 23.04 89.57
CDY06290 Canola cytosol 23.04 89.57
CDY67376 Canola cytosol 23.04 89.57
CDY69678 Canola cytosol 23.04 89.57
HORVU4Hr1G056820.1 Barley plasma membrane 95.3 89.5
HORVU6Hr1G085320.3 Barley cytosol 88.14 89.34
Zm00001d009887_P001 Maize cytosol 28.86 88.36
TraesCS4B01G196800.2 Wheat golgi 95.3 88.2
CDX70032 Canola cytosol 67.79 88.08
CDX93604 Canola cytosol 90.38 87.83
CDX95108 Canola cytosol, extracellular 95.08 87.27
HORVU6Hr1G085370.1 Barley cytosol 87.7 86.73
OQU75597 Sorghum cytosol 33.56 85.71
VIT_06s0004g03220.t01 Wine grape cytosol 95.75 82.63
VIT_19s0014g04110.t01 Wine grape cytosol 21.92 80.99
Bra030707.1-P Field mustard cytosol 95.08 72.03
CDY58828 Canola cytosol 89.93 70.77
TraesCS2D01G323300.1 Wheat cytosol, mitochondrion 15.66 66.04
KRH41785 Soybean cytosol, nucleus 35.35 31.35
KRH60492 Soybean cytosol 35.35 31.29
KRH20931 Soybean mitochondrion 28.19 28.0
KRG95471 Soybean nucleus 27.96 27.65
KRH67153 Soybean nucleus 27.96 27.53
KRH54307 Soybean mitochondrion, plastid 28.41 26.51
KRH63638 Soybean endoplasmic reticulum, nucleus, plastid 28.19 26.25
KRH11356 Soybean mitochondrion 24.16 26.15
KRH57147 Soybean plastid 27.96 26.1
KRH03857 Soybean plastid 25.5 25.5
KRH33293 Soybean plastid 11.63 22.13
KRH42938 Soybean cytosol 34.68 19.7
KRH59057 Soybean cytosol 34.9 19.67
Protein Annotations
EntrezGene:100499630MapMan:17.5.1.1Gene3D:2.40.30.10Gene3D:3.40.50.300UniProt:A0A0R0FER5EMBL:ACUP02010542
InterPro:EFTu-like_2EnsemblPlantsGene:GLYMA_17G186600GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003746GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006412GO:GO:0006414GO:GO:0008135
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016787GO:GO:0019538
InterPro:G_TR_CSInterPro:IPR000795EnsemblPlants:KRH04781ProteinID:KRH04781ProteinID:KRH04781.1HAMAP:MF_00118_A
InterPro:P-loop_NTPasePFAM:PF00009PFAM:PF03143PFAM:PF03144PRINTS:PR00315ScanProsite:PS00301
PFscan:PS51722PANTHER:PTHR23115PANTHER:PTHR23115:SF230SUPFAM:SSF50447SUPFAM:SSF50465SUPFAM:SSF52540
InterPro:TF_GTP-bd_domTIGRFAMs:TIGR00483InterPro:Transl_B-barrel_sfInterPro:Transl_elong_EF1A/Init_IF2_CInterPro:Transl_elong_EF1A_euk/arcInterPro:Transl_elong_EFTu/EF1A_C
UniParc:UPI000189CF9B:::::
Description
hypothetical protein
Coordinates
chr17:+:23719358..23722187
Molecular Weight (calculated)
49398.8 Da
IEP (calculated)
9.559
GRAVY (calculated)
-0.355
Length
447 amino acids
Sequence
(BLAST)
001: MGKEKVHISI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLS FTLGVKQMIC CCNKMDATTP KYSKARYDEI VKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLDAL DQISEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGVL KPGMVVTFAP TGLTTEVKSV EMHHESLTEA HPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKEAANFTA QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF AELMTKIDRR SGKELEKEPK FLKNGDAGFV KMIPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKNVE KKDPTGAKVT KAAQKKK
Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)
001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
Arabidopsis Description
A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.