Factsheet for Bra030707.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	Bra007056.1-P	AT3G54220.1	19228333
AT1G07930.1	Bra007056.1-P	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58828	Canola	cytosol	96.1	99.82
Bra031602.1-P	Field mustard	cytosol	75.76	99.55
Bra002483.1-P	Field mustard	cytosol	75.76	99.55
Bra018669.1-P	Field mustard	cytosol	75.76	99.55
Bra020253.1-P	Field mustard	cytosol	75.59	99.33
Bra018242.1-P	Field mustard	cytosol	75.59	99.33
Bra031605.1-P	Field mustard	cytosol	71.86	99.3
GSMUA_Achr5P24440_001	Banana	cytosol	21.36	99.21
Bra020251.1-P	Field mustard	cytosol	69.15	99.03
AT1G07930.1	Thale cress	cytosol	75.25	98.89
AT1G07920.1	Thale cress	cytosol	75.25	98.89
AT5G60390.2	Thale cress	cytosol	75.25	98.89
AT1G07940.3	Thale cress	cytosol	75.25	98.89
Bra006661.1-P	Field mustard	cytosol	74.92	98.44
HORVU5Hr1G051280.1	Barley	cytosol	17.29	98.08
Bra031601.1-P	Field mustard	cytosol	32.71	97.47
KRG93959	Soybean	nucleus	73.22	96.64
KRH58241	Soybean	nucleus	73.22	96.64
Os03t0177900-01	Rice	plasma membrane	72.88	96.2
KRH07098	Soybean	cytosol, mitochondrion, nucleus	72.88	96.2
Os03t0177400-01	Rice	cytosol	72.88	96.2
Os03t0177500-01	Rice	cytosol	72.88	96.2
Os03t0178000-02	Rice	cytosol	72.88	96.2
GSMUA_Achr2P19000_001	Banana	cytosol	12.54	96.1
Solyc06g005060.2.1	Tomato	cytosol	72.71	95.76
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	72.71	95.76
VIT_06s0004g03240.t01	Wine grape	cytosol	72.54	95.75
PGSC0003DMT400050663	Potato	cytosol	72.54	95.75
KXG20299	Sorghum	cytosol	72.54	95.75
KXG20296	Sorghum	cytosol	72.54	95.75
KXG20294	Sorghum	cytosol	72.54	95.75
KXG20293	Sorghum	cytosol	72.54	95.75
Zm00001d036904_P001	Maize	cytosol	72.54	95.75
Zm00001d037882_P001	Maize	cytosol	30.0	95.68
KRH34904	Soybean	nucleus	72.54	95.54
Solyc11g069700.1.1	Tomato	nucleus	72.37	95.53
Zm00001d046449_P003	Maize	cytosol	72.2	95.3
PGSC0003DMT400053547	Potato	cytosol	72.2	95.09
PGSC0003DMT400053553	Potato	cytosol	72.2	95.09
PGSC0003DMT400059832	Potato	cytosol	72.2	95.09
PGSC0003DMT400059830	Potato	cytosol	72.2	95.09
PGSC0003DMT400020968	Potato	cytosol	72.03	95.08
KRH04781	Soybean	endoplasmic reticulum	72.03	95.08
KRH57863	Soybean	nucleus	72.03	95.08
Solyc06g009960.1.1	Tomato	cytosol	65.93	94.88
VIT_08s0040g02330.t01	Wine grape	cytosol	71.86	94.85
GSMUA_Achr10P...	Banana	cytosol	45.25	94.68
GSMUA_Achr10P...	Banana	cytosol	44.75	94.62
Zm00001d037905_P010	Maize	cytosol	72.2	94.46
TraesCS5A01G415400.1	Wheat	cytosol	71.53	94.41
TraesCS4B01G196900.1	Wheat	golgi	71.53	94.41
TraesCS5A01G415600.1	Wheat	cytosol	71.53	94.41
TraesCS5B01G418100.1	Wheat	cytosol	71.53	94.41
TraesCS4A01G107700.1	Wheat	cytosol	71.53	94.41
TraesCS4A01G107600.1	Wheat	cytosol	71.53	94.41
TraesCS5B01G418200.1	Wheat	cytosol	71.53	94.41
HORVU4Hr1G056740.1	Barley	cytosol	71.53	94.41
Zm00001d009868_P015	Maize	cytosol	72.03	94.23
Zm00001d009870_P008	Maize	cytosol	72.03	94.23
Zm00001d037873_P010	Maize	cytosol	72.03	94.23
Zm00001d037875_P014	Maize	cytosol	71.86	94.01
Zm00001d037877_P014	Maize	cytosol	71.86	94.01
VIT_13s0019g03920.t01	Wine grape	cytosol	71.86	93.19
OQU75582	Sorghum	cytosol	19.66	92.8
HORVU4Hr1G056830.1	Barley	cytosol	45.42	91.47
HORVU5Hr1G100200.3	Barley	mitochondrion	71.53	90.95
GSMUA_Achr6P04090_001	Banana	cytosol	30.34	90.86
HORVU5Hr1G100700.3	Barley	plasma membrane	71.53	90.75
Zm00001d009887_P001	Maize	cytosol	22.2	89.73
GSMUA_Achr3P17840_001	Banana	cytosol	23.05	89.47
HORVU6Hr1G085320.3	Barley	cytosol	66.27	88.66
HORVU4Hr1G056820.1	Barley	plasma membrane	71.19	88.24
GSMUA_AchrUn_...	Banana	cytosol	31.02	87.56
TraesCS4B01G196800.2	Wheat	golgi	71.53	87.37
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	59.66	86.27
HORVU6Hr1G085370.1	Barley	cytosol	65.76	85.84
OQU75597	Sorghum	cytosol	25.25	85.14
VIT_06s0004g03220.t01	Wine grape	cytosol	72.54	82.63
VIT_19s0014g04110.t01	Wine grape	cytosol	16.61	80.99
GSMUA_Achr10P...	Banana	cytosol, plastid	29.49	80.93
GSMUA_Achr6P02020_001	Banana	mitochondrion	40.85	69.65
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	12.03	66.98
Bra013458.1-P	Field mustard	plastid	21.86	27.45
Bra038805.1-P	Field mustard	plastid	22.03	27.37
Bra036234.1-P	Field mustard	mitochondrion	21.02	27.31
Bra033753.1-P	Field mustard	plastid	21.69	27.0
Bra000853.1-P	Field mustard	mitochondrion	20.68	26.93
Bra020926.1-P	Field mustard	plastid	18.98	26.23
Bra006069.1-P	Field mustard	cytosol	26.61	24.92
Bra016571.1-P	Field mustard	cytosol	26.95	22.43
Bra028577.1-P	Field mustard	cytosol	26.44	21.37

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra030707	EnsemblPlants:Bra030707.1	EnsemblPlants:Bra030707.1-P
ncoils:Coil	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
InterPro:G_TR_CS	InterPro:IPR000795	UniProt:M4EPI7	HAMAP:MF_00118_A	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115
PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0002546D54	SEG:seg

Description

AT5G60390 (E=1e-255) | elongation factor 1-alpha / EF-1-alpha

Coordinates

chrA08:-:20709665..20712758

Molecular Weight (calculated)

65626.5 Da

IEP (calculated)

9.592

GRAVY (calculated)

-0.441

Length

590 amino acids

Sequence
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGML KPGMVVTFAP SGLTTEVKSV EMHHESLVEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKVSCL VVVMEEEPIL SRLDRIDIMV RKLEEMRLGS SRRSSSPSTP SSGTQPSSSL
501: DLSSPRSIGK VQCRSMEQVM EETERKGSLL ERLNNVEEQV LKLCLHFEKE VEEEERKKDD KKKKKGLRKF VDKVVGSSSP TKSHSKSWRC

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.