Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- vacuole 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G07930.1 | Thale cress | cytosol | 100.0 | 100.0 |
| AT1G07920.1 | Thale cress | cytosol | 100.0 | 100.0 |
| AT5G60390.2 | Thale cress | cytosol | 100.0 | 100.0 |
| Bra031602.1-P | Field mustard | cytosol | 99.33 | 99.33 |
| Bra018669.1-P | Field mustard | cytosol | 99.33 | 99.33 |
| Bra002483.1-P | Field mustard | cytosol | 99.33 | 99.33 |
| GSMUA_Achr5P24440_001 | Banana | cytosol | 28.06 | 99.21 |
| Bra018242.1-P | Field mustard | cytosol | 99.11 | 99.11 |
| Bra020253.1-P | Field mustard | cytosol | 99.11 | 99.11 |
| Bra031605.1-P | Field mustard | cytosol | 94.21 | 99.06 |
| Bra020251.1-P | Field mustard | cytosol | 90.65 | 98.79 |
| Bra006661.1-P | Field mustard | cytosol | 98.22 | 98.22 |
| HORVU5Hr1G051280.1 | Barley | cytosol | 22.72 | 98.08 |
| Bra031601.1-P | Field mustard | cytosol | 42.98 | 97.47 |
| KRH58241 | Soybean | nucleus | 96.44 | 96.87 |
| KRG93959 | Soybean | nucleus | 96.44 | 96.87 |
| Solyc06g009970.2.1 | Tomato | extracellular, nucleus, plastid | 96.21 | 96.43 |
| Solyc06g005060.2.1 | Tomato | cytosol | 96.21 | 96.43 |
| Zm00001d037882_P001 | Maize | cytosol | 39.64 | 96.22 |
| KRH07098 | Soybean | cytosol, mitochondrion, nucleus | 95.77 | 96.2 |
| PGSC0003DMT400050663 | Potato | cytosol | 95.77 | 96.2 |
| GSMUA_Achr2P19000_001 | Banana | cytosol | 16.48 | 96.1 |
| PGSC0003DMT400059830 | Potato | cytosol | 95.77 | 95.98 |
| PGSC0003DMT400053547 | Potato | cytosol | 95.77 | 95.98 |
| PGSC0003DMT400053553 | Potato | cytosol | 95.77 | 95.98 |
| PGSC0003DMT400059832 | Potato | cytosol | 95.77 | 95.98 |
| Solyc11g069700.1.1 | Tomato | nucleus | 95.55 | 95.97 |
| KRH34904 | Soybean | nucleus | 95.55 | 95.76 |
| PGSC0003DMT400020968 | Potato | cytosol | 95.32 | 95.75 |
| Os03t0178000-02 | Rice | cytosol | 95.32 | 95.75 |
| Os03t0177900-01 | Rice | plasma membrane | 95.32 | 95.75 |
| Os03t0177500-01 | Rice | cytosol | 95.32 | 95.75 |
| Os03t0177400-01 | Rice | cytosol | 95.32 | 95.75 |
| Zm00001d046449_P003 | Maize | cytosol | 95.32 | 95.75 |
| KXG20299 | Sorghum | cytosol | 95.32 | 95.75 |
| KXG20296 | Sorghum | cytosol | 95.32 | 95.75 |
| KXG20294 | Sorghum | cytosol | 95.32 | 95.75 |
| KXG20293 | Sorghum | cytosol | 95.32 | 95.75 |
| Zm00001d036904_P001 | Maize | cytosol | 95.32 | 95.75 |
| VIT_06s0004g03240.t01 | Wine grape | cytosol | 94.88 | 95.3 |
| Solyc06g009960.1.1 | Tomato | cytosol | 86.86 | 95.12 |
| KRH04781 | Soybean | endoplasmic reticulum | 94.65 | 95.08 |
| TraesCS5B01G418200.1 | Wheat | cytosol | 94.65 | 95.08 |
| TraesCS5B01G418100.1 | Wheat | cytosol | 94.65 | 95.08 |
| TraesCS5A01G415600.1 | Wheat | cytosol | 94.65 | 95.08 |
| TraesCS5A01G415400.1 | Wheat | cytosol | 94.65 | 95.08 |
| TraesCS4B01G196900.1 | Wheat | golgi | 94.65 | 95.08 |
| TraesCS4A01G107700.1 | Wheat | cytosol | 94.65 | 95.08 |
| TraesCS4A01G107600.1 | Wheat | cytosol | 94.65 | 95.08 |
| HORVU4Hr1G056740.1 | Barley | cytosol | 94.65 | 95.08 |
| KRH57863 | Soybean | nucleus | 94.65 | 95.08 |
| Zm00001d037905_P010 | Maize | cytosol | 95.32 | 94.9 |
| GSMUA_Achr10P... | Banana | cytosol | 59.47 | 94.68 |
| Zm00001d037873_P010 | Maize | cytosol | 95.1 | 94.68 |
| Zm00001d009870_P008 | Maize | cytosol | 95.1 | 94.68 |
| Zm00001d009868_P015 | Maize | cytosol | 95.1 | 94.68 |
| VIT_08s0040g02330.t01 | Wine grape | cytosol | 94.21 | 94.63 |
| GSMUA_Achr10P... | Banana | cytosol | 58.8 | 94.62 |
| Zm00001d037877_P014 | Maize | cytosol | 94.88 | 94.46 |
| Zm00001d037875_P014 | Maize | cytosol | 94.88 | 94.46 |
| VIT_13s0019g03920.t01 | Wine grape | cytosol | 94.21 | 92.97 |
| OQU75582 | Sorghum | cytosol | 25.84 | 92.8 |
| HORVU4Hr1G056830.1 | Barley | cytosol | 60.36 | 92.49 |
| HORVU5Hr1G100200.3 | Barley | mitochondrion | 94.65 | 91.59 |
| HORVU5Hr1G100700.3 | Barley | plasma membrane | 94.65 | 91.4 |
| GSMUA_Achr6P04090_001 | Banana | cytosol | 39.87 | 90.86 |
| Zm00001d009887_P001 | Maize | cytosol | 29.18 | 89.73 |
| GSMUA_Achr3P17840_001 | Banana | cytosol | 30.29 | 89.47 |
| HORVU6Hr1G085320.3 | Barley | cytosol | 87.75 | 89.34 |
| HORVU4Hr1G056820.1 | Barley | plasma membrane | 94.21 | 88.87 |
| TraesCS4B01G196800.2 | Wheat | golgi | 94.65 | 87.99 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.76 | 87.56 |
| HORVU6Hr1G085370.1 | Barley | cytosol | 87.08 | 86.5 |
| GSMUA_Achr7P15510_001 | Banana | cytosol, plasma membrane | 78.4 | 86.27 |
| OQU75597 | Sorghum | cytosol | 33.18 | 85.14 |
| VIT_06s0004g03220.t01 | Wine grape | cytosol | 94.88 | 82.24 |
| VIT_19s0014g04110.t01 | Wine grape | cytosol | 21.83 | 80.99 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 38.75 | 80.93 |
| Bra030707.1-P | Field mustard | cytosol | 98.89 | 75.25 |
| GSMUA_Achr6P02020_001 | Banana | mitochondrion | 53.45 | 69.36 |
| TraesCS2D01G323300.1 | Wheat | cytosol, mitochondrion | 15.81 | 66.98 |
| AT1G18070.3 | Thale cress | cytosol | 34.97 | 28.91 |
| AT4G02930.1 | Thale cress | mitochondrion | 27.84 | 27.53 |
| AT4G20360.1 | Thale cress | plastid | 28.29 | 26.68 |
| AT5G10630.4 | Thale cress | cytosol | 33.85 | 20.46 |
Protein Annotations
| MapMan:17.5.1.1 | Gene3D:2.40.30.10 | Gene3D:3.40.50.300 | EntrezGene:836161 | EntrezGene:837307 | EntrezGene:837308 |
| EntrezGene:837309 | UniProt:A0A178WJC9 | ProteinID:AAB07882.1 | ProteinID:AAB07883.1 | ProteinID:AAB07884.1 | ProteinID:AAF79822.1 |
| ProteinID:AAF79847.1 | EMBL:AC026875 | ProteinID:AED97318.1 | ProteinID:AED97319.2 | ProteinID:AED97320.1 | ProteinID:AEE28212.1 |
| ProteinID:AEE28213.1 | ProteinID:AEE28215.1 | ProteinID:AEE28216.1 | EMBL:AF360167 | EMBL:AF361822 | EMBL:AF419586 |
| EMBL:AK226349 | EMBL:AK226639 | EMBL:AK227998 | EMBL:AK230352 | EMBL:AK317216 | ProteinID:ANM58322.1 |
| ProteinID:ANM58323.1 | ArrayExpress:AT1G07940 | EnsemblPlantsGene:AT1G07940 | RefSeq:AT1G07940 | TAIR:AT1G07940 | RefSeq:AT1G07940-TAIR-G |
| EnsemblPlants:AT1G07940.3 | EMBL:AY039583 | EMBL:AY048275 | EMBL:AY059160 | EMBL:AY059904 | EMBL:AY060564 |
| EMBL:AY062553 | EMBL:AY065008 | EMBL:AY080660 | EMBL:AY088358 | EMBL:AY114651 | EMBL:AY123029 |
| EMBL:AY128802 | EMBL:AY133532 | EMBL:AY140095 | EMBL:AY140099 | Unigene:At.69737 | ProteinID:BAB08224.1 |
| EMBL:BT000595 | EMBL:BT000688 | EMBL:BT002423 | EMBL:BT002442 | EMBL:BT002510 | EMBL:BT003325 |
| EMBL:BT006369 | ProteinID:CAA34453.1 | ProteinID:CAA34454.1 | ProteinID:CAA34455.1 | ProteinID:CAA34456.1 | InterPro:EFTu-like_2 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003746 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008135 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0046686 | InterPro:G_TR_CS |
| InterPro:IPR000795 | HAMAP:MF_00118_A | RefSeq:NP_001030993.1 | RefSeq:NP_001119464.1 | RefSeq:NP_001318848.1 | RefSeq:NP_001320767.1 |
| RefSeq:NP_001320768.1 | RefSeq:NP_200847.1 | RefSeq:NP_563799.1 | RefSeq:NP_563800.1 | RefSeq:NP_563801.1 | ProteinID:OAO92627.1 |
| ProteinID:OAP12416.1 | ProteinID:OAP13329.1 | ProteinID:OAP18437.1 | InterPro:P-loop_NTPase | UniProt:P0DH99 | PFAM:PF00009 |
| PFAM:PF03143 | PFAM:PF03144 | PRINTS:PR00315 | ScanProsite:PS00301 | PFscan:PS51722 | PANTHER:PTHR23115 |
| PANTHER:PTHR23115:SF230 | UniProt:Q0WL56 | UniProt:Q8GTY0 | UniProt:Q8W4H7 | SUPFAM:SSF50447 | SUPFAM:SSF50465 |
| SUPFAM:SSF52540 | InterPro:TF_GTP-bd_dom | TIGRFAMs:TIGR00483 | InterPro:Transl_B-barrel_sf | InterPro:Transl_elong_EF1A/Init_IF2_C | InterPro:Transl_elong_EF1A_euk/arc |
| InterPro:Transl_elong_EFTu/EF1A_C | UniParc:UPI0000000B93 | SEG:seg | : | : | : |
Description
A1Elongation factor 1-alpha 3 [Source:UniProtKB/Swiss-Prot;Acc:Q0WL56]
Coordinates
chr1:-:2462949..2465494
Molecular Weight (calculated)
49505.1 Da
IEP (calculated)
9.637
GRAVY (calculated)
-0.325
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.