Factsheet for PGSC0003DMT400053547

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	PGSC0003DMT400043358	AT3G54220.1	19228333
AT1G07930.1	PGSC0003DMT400043358	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053553	Potato	cytosol	100.0	100.0
PGSC0003DMT400059830	Potato	cytosol	100.0	100.0
PGSC0003DMT400059832	Potato	cytosol	100.0	100.0
PGSC0003DMT400020968	Potato	cytosol	99.55	99.78
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	99.11	99.11
GSMUA_Achr5P24440_001	Banana	cytosol	27.9	98.43
CDY09214	Canola	cytosol	35.04	98.12
HORVU5Hr1G051280.1	Barley	cytosol	22.77	98.08
Solyc06g009960.1.1	Tomato	cytosol	89.73	98.05
PGSC0003DMT400050663	Potato	cytosol	97.1	97.32
KRG93959	Soybean	nucleus	96.21	96.42
Zm00001d037882_P001	Maize	cytosol	39.73	96.22
Os03t0177500-01	Rice	cytosol	95.98	96.2
KRH57863	Soybean	nucleus	95.98	96.2
KRH58241	Soybean	nucleus	95.98	96.2
Os03t0177400-01	Rice	cytosol	95.98	96.2
Os03t0177900-01	Rice	plasma membrane	95.98	96.2
Os03t0178000-02	Rice	cytosol	95.98	96.2
Bra031601.1-P	Field mustard	cytosol	42.41	95.96
AT1G07930.1	Thale cress	cytosol	95.98	95.77
AT1G07940.3	Thale cress	cytosol	95.98	95.77
AT5G60390.2	Thale cress	cytosol	95.98	95.77
AT1G07920.1	Thale cress	cytosol	95.98	95.77
KRH04781	Soybean	endoplasmic reticulum	95.54	95.75
CDY06287	Canola	cytosol	48.44	95.59
KRH07098	Soybean	cytosol, mitochondrion, nucleus	95.31	95.53
Zm00001d046449_P003	Maize	cytosol	95.31	95.53
KRH34904	Soybean	nucleus	95.31	95.31
TraesCS4B01G196900.1	Wheat	golgi	95.09	95.3
TraesCS5B01G418100.1	Wheat	cytosol	95.09	95.3
TraesCS5B01G418200.1	Wheat	cytosol	95.09	95.3
Zm00001d036904_P001	Maize	cytosol	95.09	95.3
KXG20299	Sorghum	cytosol	95.09	95.3
KXG20296	Sorghum	cytosol	95.09	95.3
KXG20294	Sorghum	cytosol	95.09	95.3
KXG20293	Sorghum	cytosol	95.09	95.3
HORVU4Hr1G056740.1	Barley	cytosol	95.09	95.3
CDX88757	Canola	cytosol	85.27	95.26
Zm00001d009870_P008	Maize	cytosol	95.76	95.12
Zm00001d037873_P010	Maize	cytosol	95.76	95.12
Bra002483.1-P	Field mustard	cytosol	95.31	95.1
Bra018669.1-P	Field mustard	cytosol	95.31	95.1
Bra031602.1-P	Field mustard	cytosol	95.31	95.1
Zm00001d037875_P014	Maize	cytosol	95.54	94.9
Zm00001d037905_P010	Maize	cytosol	95.54	94.9
Zm00001d037877_P014	Maize	cytosol	95.54	94.9
Bra018242.1-P	Field mustard	cytosol	95.09	94.88
Bra020253.1-P	Field mustard	cytosol	95.09	94.88
CDY61938	Canola	cytosol	90.62	94.86
CDY10804	Canola	cytosol	90.62	94.86
CDY09211	Canola	cytosol	90.62	94.86
CDY34479	Canola	cytosol	90.62	94.86
TraesCS5A01G415600.1	Wheat	cytosol	94.64	94.85
TraesCS5A01G415400.1	Wheat	cytosol	94.64	94.85
TraesCS4A01G107700.1	Wheat	cytosol	94.64	94.85
TraesCS4A01G107600.1	Wheat	cytosol	94.64	94.85
Zm00001d009868_P015	Maize	cytosol	95.31	94.68
GSMUA_Achr10P...	Banana	cytosol	58.93	94.62
CDY22711	Canola	cytosol	90.18	94.61
CDY22710	Canola	cytosol	90.18	94.61
Bra031605.1-P	Field mustard	cytosol	90.18	94.61
CDY67375	Canola	cytosol	58.71	94.6
VIT_08s0040g02330.t01	Wine grape	cytosol	94.2	94.41
Bra006661.1-P	Field mustard	cytosol	94.42	94.21
Bra020251.1-P	Field mustard	cytosol	86.61	94.17
CDY06289	Canola	cytosol	53.79	94.14
HORVU4Hr1G056830.1	Barley	cytosol	61.38	93.86
GSMUA_Achr10P...	Banana	cytosol	58.93	93.62
OQU75582	Sorghum	cytosol	26.12	93.6
CDY06288	Canola	cytosol	23.88	93.04
CDY06290	Canola	cytosol	23.88	93.04
CDY67376	Canola	cytosol	23.88	93.04
CDY69678	Canola	cytosol	23.88	93.04
GSMUA_Achr6P04090_001	Banana	cytosol	40.62	92.39
HORVU5Hr1G100200.3	Barley	mitochondrion	95.09	91.81
HORVU5Hr1G100700.3	Barley	plasma membrane	95.09	91.61
HORVU6Hr1G085320.3	Barley	cytosol	88.39	89.8
HORVU4Hr1G056820.1	Barley	plasma membrane	95.09	89.5
GSMUA_AchrUn_...	Banana	cytosol	41.74	89.47
Zm00001d009887_P001	Maize	cytosol	29.02	89.04
GSMUA_Achr3P17840_001	Banana	cytosol	30.13	88.82
CDX70032	Canola	cytosol	68.08	88.66
CDX93604	Canola	cytosol	90.62	88.26
TraesCS4B01G196800.2	Wheat	golgi	95.09	88.2
CDX95108	Canola	cytosol, extracellular	95.31	87.68
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	79.46	87.25
HORVU6Hr1G085370.1	Barley	cytosol	87.72	86.95
OQU75597	Sorghum	cytosol	33.71	86.29
GSMUA_Achr10P...	Banana	cytosol, plastid	39.29	81.86
Bra030707.1-P	Field mustard	cytosol	95.09	72.2
CDY58828	Canola	cytosol	89.96	70.95
GSMUA_Achr6P02020_001	Banana	mitochondrion	52.68	68.21
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	15.62	66.04
PGSC0003DMT400014425	Potato	cytosol	33.48	30.55
PGSC0003DMT400009804	Potato	mitochondrion	28.35	28.22
PGSC0003DMT400037909	Potato	plastid	28.12	27.94
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	29.02	27.25
PGSC0003DMT400092196	Potato	plastid	28.57	26.83

Protein Annotations

EntrezGene:102600107	EntrezGene:102600444	EntrezGene:102600998	MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300
ProteinID:AAQ90154	ProteinID:AAQ90154.1	EMBL:AB061263	ProteinID:ABB02622	ProteinID:ABB02622.1	ProteinID:ABB16975
ProteinID:ABB16975.1	ProteinID:ABB16977	ProteinID:ABB16977.1	ProteinID:ABB16996	ProteinID:ABB16996.1	ProteinID:ABB55388
ProteinID:ABB55388.1	ProteinID:ABB72813	ProteinID:ABB72813.1	ProteinID:AFW90638	ProteinID:AFW90638.1	EMBL:AY300042
ProteinID:BAC23049	ProteinID:BAC23049.1	EMBL:DQ222490	EMBL:DQ228326	EMBL:DQ228328	EMBL:DQ228347
EMBL:DQ252511	EMBL:DQ268854	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	EMBL:JX576282	HAMAP:MF_00118_A	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	EnsemblPlantsGene:PGSC0003DMG400020772	PGSC:PGSC0003DMG400020772	EnsemblPlants:PGSC0003DMT400053547
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	UniProt:Q2XTC2
SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI00005E47A0	RefSeq:XP_006343452.1	RefSeq:XP_006343454.1
RefSeq:XP_006343455.1	:	:	:	:	:

Description

Elongation factor 1-alpha [Source:PGSC_GENE;Acc:PGSC0003DMG400020772]

Coordinates

chr6:+:8900011..8901828

Molecular Weight (calculated)

49259.9 Da

IEP (calculated)

9.656

GRAVY (calculated)

-0.296

Length

448 amino acids

Sequence
(BLAST)

001: MGKEKIHISI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI VKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLDAL DQINEPKRPT DKPLRLPLQD VYKIGGIGTV PVGRVETGVI KPGMVVTFGP TGLTTEVKSV EMHHEALLEA LPGDNVGFNV
301: KNVAVKDLKR GFVASNSKDD PAKGAASFTA QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF AEILTKIDRR SGKELEKEPK FLKNGDAGMV KMIPTKPMVV
401: ETFAEYPPLG RFAVRDMRQT VAVGVVKNVD KKDPTGAKVT KAAQKKGK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.