Factsheet for PGSC0003DMT400009804

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 6
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g073000.2.1	Tomato	plastid	98.44	98.44
PGSC0003DMT400037909	Potato	plastid	92.0	91.8
AT4G02930.1	Thale cress	mitochondrion	88.0	87.22
Bra036234.1-P	Field mustard	mitochondrion	87.33	86.56
CDX90912	Canola	mitochondrion	87.11	86.53
Bra000853.1-P	Field mustard	mitochondrion	86.89	86.31
CDY17978	Canola	mitochondrion	86.89	86.31
KRG95471	Soybean	nucleus	86.67	86.28
CDY22085	Canola	mitochondrion	87.11	86.15
CDY21923	Canola	mitochondrion	86.89	85.75
KRH67153	Soybean	nucleus	86.44	85.68
GSMUA_Achr3P24830_001	Banana	mitochondrion	85.56	84.62
GSMUA_Achr8P06040_001	Banana	mitochondrion	85.33	84.4
HORVU5Hr1G122350.1	Barley	cytosol	57.56	84.36
Os03t0851100-01	Rice	mitochondrion	82.0	81.46
Zm00001d034856_P003	Maize	mitochondrion	81.56	81.19
EER90508	Sorghum	mitochondrion	81.56	81.02
TraesCS4A01G330400.1	Wheat	mitochondrion	79.33	78.98
TraesCS5D01G542300.1	Wheat	mitochondrion	79.11	78.94
TraesCS5B01G545200.1	Wheat	mitochondrion	78.89	78.54
TraesCS1B01G431000.1	Wheat	cytosol	68.0	76.5
Zm00001d012846_P005	Maize	mitochondrion	77.11	76.43
Zm00001d040673_P001	Maize	mitochondrion	18.67	73.68
TraesCS5B01G545300.2	Wheat	cytosol	64.44	72.86
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	61.56	58.07
PGSC0003DMT400092196	Potato	plastid	61.56	58.07
CDY62618	Canola	endoplasmic reticulum, mitochondrion	47.56	57.37
VIT_12s0034g01800.t01	Wine grape	cytosol	26.89	32.79
PGSC0003DMT400020968	Potato	cytosol	28.22	28.41
PGSC0003DMT400059832	Potato	cytosol	28.22	28.35
PGSC0003DMT400059830	Potato	cytosol	28.22	28.35
PGSC0003DMT400053553	Potato	cytosol	28.22	28.35
PGSC0003DMT400053547	Potato	cytosol	28.22	28.35
PGSC0003DMT400050663	Potato	cytosol	28.0	28.19
PGSC0003DMT400014425	Potato	cytosol	21.33	19.55

Protein Annotations

EntrezGene:102602312	MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTU_2	InterPro:EFTu-like_2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	UniProt:M0ZWY7
HAMAP:MF_00118_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	EnsemblPlantsGene:PGSC0003DMG400003838
PGSC:PGSC0003DMG400003838	EnsemblPlants:PGSC0003DMT400009804	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43721
PANTHER:PTHR43721:SF12	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org
UniParc:UPI000296CA44	RefSeq:XP_006358430.1	SEG:seg	:	:	:

Description

Elongation factor Tu [Source:PGSC_GENE;Acc:PGSC0003DMG400003838]

Coordinates

chr9:-:51056116..51063096

Molecular Weight (calculated)

49064.3 Da

IEP (calculated)

7.285

GRAVY (calculated)

-0.185

Length

450 amino acids

Sequence
(BLAST)

001: MASVVFRNPN SKRVLSLSPQ IYSCCRGGSV SSQFSLSQTR NGNDTSSLSN PWWRSMATFN RTKPHVNVGT IGHVDHGKTT LTAAITKVLA EEGKAKAVAF
101: DEIDKAPEEK KRGITIATAH VEYETAKRHY AHVDCPGHAD YVKNMITGAA QMDGGILVVS APDGPMPQTK EHILLARQVG VPSLVCFLNK VDAVDDLELL
201: ELVEMELREL LSFYKFPGDE IPIIRGSALS ALQGTNEEIG KKAILKLMDA VDEYIPDPVR QLDKPFLMPV EDVFSIQGRG TVATGRIEQG TIKVGEDVEI
301: LGLMQGTLKS TVTGVEMFKK ILDNGQAGDN VGLLLRGLKR EDITRGMVIA KPGSVKTSKK FEAEIYVLTK DEGGRHTAFF SNYRPQFYMR TADITGKVEL
401: PENVKMVMPG DNVTATFELI SPVPLETGQR FALREGGRTV GAGVVSKVLS

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.