Factsheet for VIT_12s0034g01800.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040673_P001	Maize	mitochondrion	19.24	62.28
HORVU5Hr1G122350.1	Barley	cytosol	26.83	32.25
VIT_07s0104g00600.t01	Wine grape	mitochondrion	36.31	29.84
Solyc09g073000.2.1	Tomato	plastid	33.06	27.11
PGSC0003DMT400009804	Potato	mitochondrion	32.79	26.89
GSMUA_Achr8P06040_001	Banana	mitochondrion	32.79	26.59
AT4G02930.1	Thale cress	mitochondrion	32.52	26.43
Bra036234.1-P	Field mustard	mitochondrion	32.52	26.43
CDY22085	Canola	mitochondrion	32.52	26.37
GSMUA_Achr3P24830_001	Banana	mitochondrion	32.52	26.37
Bra000853.1-P	Field mustard	mitochondrion	32.25	26.27
CDY17978	Canola	mitochondrion	32.25	26.27
PGSC0003DMT400037909	Potato	plastid	31.98	26.16
Os03t0851100-01	Rice	mitochondrion	31.98	26.05
CDX90912	Canola	mitochondrion	31.98	26.05
CDY21923	Canola	mitochondrion	31.98	25.88
Solyc06g008940.2.1	Tomato	unclear	31.44	25.72
EER90508	Sorghum	mitochondrion	31.17	25.39
Zm00001d012846_P005	Maize	mitochondrion	31.17	25.33
Zm00001d034856_P003	Maize	mitochondrion	30.89	25.22
TraesCS5D01G542300.1	Wheat	mitochondrion	30.62	25.06
TraesCS5B01G545200.1	Wheat	mitochondrion	30.62	25.0
TraesCS1B01G431000.1	Wheat	cytosol	27.1	25.0
TraesCS4A01G330400.1	Wheat	mitochondrion	30.62	25.0
TraesCS5B01G545300.2	Wheat	cytosol	26.83	24.87
CDY62618	Canola	endoplasmic reticulum, mitochondrion	22.76	22.52
VIT_17s0000g09370.t01	Wine grape	plastid	24.93	18.93
VIT_14s0066g00220.t01	Wine grape	plastid	23.85	18.07
VIT_17s0000g09140.t01	Wine grape	cytosol	5.69	13.12
VIT_05s0029g00030.t01	Wine grape	cytosol	3.52	9.92
VIT_06s0004g03240.t01	Wine grape	cytosol	10.03	8.28
VIT_08s0040g02330.t01	Wine grape	cytosol	10.03	8.28
VIT_13s0019g03920.t01	Wine grape	cytosol	10.03	8.13
VIT_17s0000g02860.t01	Wine grape	plastid	10.84	7.71
VIT_06s0004g03220.t01	Wine grape	cytosol	10.3	7.34
VIT_03s0017g00530.t01	Wine grape	cytosol	12.74	6.18
VIT_19s0014g04110.t01	Wine grape	cytosol	1.36	4.13

Protein Annotations

Gene3D:1.10.560.10	Gene3D:2.40.30.10	MapMan:22.6.5.6	Gene3D:3.50.7.10	ProteinID:CCB48688	ProteinID:CCB48688.1
InterPro:Chap_CCT_epsi	InterPro:Cpn60/TCP-1	UniProt:F6H8Y9	EMBL:FN595497	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0006412	GO:GO:0006414	GO:GO:0006457	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0030036
GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027413	PFAM:PF00118
PFAM:PF03143	PANTHER:PTHR11353	PANTHER:PTHR11353:SF178	SUPFAM:SSF48592	SUPFAM:SSF50465	SUPFAM:SSF52029
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0002109844	ArrayExpress:VIT_12s0034g01800	EnsemblPlantsGene:VIT_12s0034g01800	EnsemblPlants:VIT_12s0034g01800.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:18016828..18018294

Molecular Weight (calculated)

40219.1 Da

IEP (calculated)

4.700

GRAVY (calculated)

0.009

Length

369 amino acids

Sequence
(BLAST)

001: MNQVDIAASF QISYFTSEVA PFGESLVVLA YILGEEDGGK EFSSTIPSRQ GNAQRPEVHI VIWNNDELAT DALPVVTMLV VSGKTGESNC VINGSKHKDV
101: GATSVICQWG FDDEANHLLL HGNLLAFRWV SGVGLKLVAI ATGGRIVPRS QELTQEKLGK ADHLLYLFVI SCSIAVEAAA DRYPGVEQYA IRAFGDALDS
201: IPMMLAENSG LRLIETLLAV RSQQIKEDIQ RRQVIAKPGT CKTYKRFEVE IYVLTKDEGG RHTAFVTNYR PQFYMRTADA TGKVQLLEEV NMVMPGDDVT
301: AVFELISAVP LEAGQRFALR EGGVTAQVIV IEGSVGCDPY SESPDLSQAS FIPSLFAVMR EDGAPTKQP

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.