Factsheet for Solyc06g008940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 5
mitochondrion 6

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037909	Potato	plastid	99.11	99.11
Solyc09g073000.2.1	Tomato	plastid	91.8	92.0
KRG95471	Soybean	nucleus	85.14	84.96
GSMUA_Achr3P24830_001	Banana	mitochondrion	85.37	84.62
AT4G02930.1	Thale cress	mitochondrion	85.14	84.58
GSMUA_Achr8P06040_001	Banana	mitochondrion	85.14	84.4
KRH67153	Soybean	nucleus	84.7	84.14
Bra036234.1-P	Field mustard	mitochondrion	84.48	83.92
CDX90912	Canola	mitochondrion	84.26	83.89
HORVU5Hr1G122350.1	Barley	cytosol	56.98	83.71
Bra000853.1-P	Field mustard	mitochondrion	84.04	83.66
CDY17978	Canola	mitochondrion	84.04	83.66
CDY22085	Canola	mitochondrion	84.26	83.52
CDY21923	Canola	mitochondrion	83.81	82.89
Os03t0851100-01	Rice	mitochondrion	81.37	81.02
Zm00001d034856_P003	Maize	mitochondrion	80.93	80.75
EER90508	Sorghum	mitochondrion	80.93	80.57
TraesCS5B01G545200.1	Wheat	mitochondrion	78.49	78.32
TraesCS4A01G330400.1	Wheat	mitochondrion	78.49	78.32
TraesCS5D01G542300.1	Wheat	mitochondrion	78.05	78.05
Zm00001d012846_P005	Maize	mitochondrion	76.27	75.77
TraesCS1B01G431000.1	Wheat	cytosol	66.3	74.75
TraesCS5B01G545300.2	Wheat	cytosol	63.19	71.61
Zm00001d040673_P001	Maize	mitochondrion	17.74	70.18
Solyc03g112150.1.1	Tomato	plastid	61.86	58.49
Solyc06g071790.2.1	Tomato	nucleus, plastid	58.09	58.22
CDY62618	Canola	endoplasmic reticulum, mitochondrion	46.56	56.3
VIT_12s0034g01800.t01	Wine grape	cytosol	25.72	31.44
Solyc03g118990.1.1	Tomato	cytosol	4.66	30.0
Solyc06g009960.1.1	Tomato	cytosol	26.39	29.02
Solyc11g069700.1.1	Tomato	nucleus	28.38	28.64
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	28.38	28.57
Solyc06g005060.2.1	Tomato	cytosol	28.38	28.57
Solyc06g069020.2.1	Tomato	cytosol, nucleus	24.39	20.6
Solyc03g119290.2.1	Tomato	cytosol	25.5	19.56
Solyc12g036410.1.1	Tomato	cytosol	23.95	18.37

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	UniProt:K4C3S4	HAMAP:MF_00118_B
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301
PFscan:PS51722	PANTHER:PTHR43721	PANTHER:PTHR43721:SF12	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	EnsemblPlantsGene:Solyc06g008940.2	EnsemblPlants:Solyc06g008940.2.1	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI0002766AFE	SEG:seg

Description

Elongation factor Tu [Source:UniProtKB/TrEMBL;Acc:K4C3S4]

Coordinates

chr6:+:2866762..2874822

Molecular Weight (calculated)

49146.5 Da

IEP (calculated)

6.740

GRAVY (calculated)

-0.132

Length

451 amino acids

Sequence
(BLAST)

001: MASIAFRSSN SKRLLAVSPQ LYSSCCRGSV PAQFSLSETI NANEAPAFCN HPWWRSMATF TRTKPHVNVG TIGHVDHGKT TLTAAITKVL AEEGKAKAVA
101: FDEIDKAPEE KKRGITIATA HVEYETAKRH YAHVDCPGHA DYVKNMITGA AQMDGGILVV SAPDGPMPQT KEHILLARQV GVPSLVCFLN KVDAVDDPEL
201: LELVEMELRE LLSFYKFPGD DIPIVRGSAL SALQSTNEEI GKKAILKLME AVDEYIPDPV RQLDKPFLMP IEDVFSIQGR GTVATGRVEQ GTIKVGEDVE
301: ILGLMQGTLK STVTGVEMFK KILDHGQAGD NVGLLLRGLK RDDITRGMVI AKPGSVKTCK KFEAEIYVLT KDEGGRHTAF FSNYMPQFYM RTADITGKVE
401: LPENVKMVMP GDNVTATFEL MSPVPLDAGQ RFALREGGRT VGAGVVSKVI N

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.