Factsheet for Solyc03g112150.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	98.32	98.32
Solyc06g071790.2.1	Tomato	nucleus, plastid	85.33	90.44
GSMUA_AchrUn_...	Banana	cytosol	34.17	89.07
VIT_17s0000g09370.t01	Wine grape	plastid	85.33	83.74
KRH57147	Soybean	plastid	83.86	83.51
Bra033753.1-P	Field mustard	plastid	82.81	83.33
Bra013458.1-P	Field mustard	plastid	81.55	82.77
Bra038805.1-P	Field mustard	plastid	82.39	82.74
AT4G20360.1	Thale cress	plastid	82.18	82.35
CDX82758	Canola	plastid	48.85	82.04
Bra020926.1-P	Field mustard	plastid	72.54	81.03
CDY49022	Canola	plastid	57.65	80.17
CDX98668	Canola	plastid	46.54	80.14
CDY49485	Canola	plastid	57.44	80.12
KRH03857	Soybean	plastid	74.21	79.19
CDX94002	Canola	plastid	46.75	78.8
EES05366	Sorghum	plastid	76.52	78.33
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	51.36	78.27
Zm00001d017092_P001	Maize	plastid	76.1	78.06
CDY54570	Canola	plastid	50.94	77.88
CDX78988	Canola	plastid	49.27	77.81
Zm00001d050969_P001	Maize	plastid	75.89	77.68
Os02t0595700-01	Rice	plastid	75.68	77.3
CDY31442	Canola	plastid	50.1	76.6
TraesCS6B01G238600.1	Wheat	plastid	75.05	76.5
TraesCS6A01G209800.1	Wheat	plastid	75.26	76.38
TraesCS6D01G193000.1	Wheat	nucleus, plastid	75.26	76.38
HORVU6Hr1G053680.5	Barley	plastid	70.65	65.56
Solyc06g008940.2.1	Tomato	unclear	58.49	61.86
Solyc09g073000.2.1	Tomato	plastid	58.07	61.56
Solyc06g009960.1.1	Tomato	cytosol	24.95	29.02
Solyc11g069700.1.1	Tomato	nucleus	26.83	28.64
Solyc06g005060.2.1	Tomato	cytosol	26.83	28.57
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	26.83	28.57
Solyc03g118990.1.1	Tomato	cytosol	3.98	27.14
Solyc06g069020.2.1	Tomato	cytosol, nucleus	24.95	22.28
Solyc03g119290.2.1	Tomato	cytosol	23.69	19.22
Solyc12g036410.1.1	Tomato	cytosol	23.48	19.05

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	UniProt:K4BK69	HAMAP:MF_00118_B
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301
PFscan:PS51722	PANTHER:PTHR43721	PANTHER:PTHR43721:SF13	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	EnsemblPlantsGene:Solyc03g112150.1	EnsemblPlants:Solyc03g112150.1.1	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI00027692F6	SEG:seg

Description

Elongation factor Tu [Source:UniProtKB/TrEMBL;Acc:K4BK69]

Coordinates

chr3:+:62645525..62646958

Molecular Weight (calculated)

51808.6 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.145

Length

477 amino acids

Sequence
(BLAST)

001: MASISAAAAT ATSSPKLLNP SNPLLPSAAK PSKLILSSSF TPNFSTLLLH SPAATSPTTH HQRRFTVRAA RGKFERKKPH VNIGTIGHVD HGKTTLTAAL
101: TMALASMGNS APKKYDEIDA APEERARGIT INTATVEYET ENRHYAHVDC PGHADYVKNM ITGAAQMDGA ILVVSGADGP MPQTKEHILL AKQVGVPNMV
201: VFLNKQDQVD DEELLELVEL EVRELLSSYE FPGDDIPIVS GSALLALEAL MANPSIKRGE NEWVDKIFTL MDNVDSYIPI PQRQTELPFL MAIEDVFSIT
301: GRGTVATGRV ERGTVRVGET VDIVGLRDTR STTVTGVEMF QKILDEAMAG DNVGLLLRGI QKIDIQRGMV LAKPGTITPH TKFEALVYVL KKEEGGRHSP
401: FFSGYRPQFY MRTTDVTGKV TSITTDKGDE SKMVMPGDRV NLVVELIMPV ACEQGMRFAI REGGKTVGAG VIQKILE

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.