Factsheet for TraesCS6B01G238600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817
plastid: 22160430
plastid: 22736107
golgi: 25769308

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G193000.1	Wheat	nucleus, plastid	99.57	99.15
TraesCS6A01G209800.1	Wheat	plastid	99.57	99.15
Zm00001d017092_P001	Maize	plastid	88.89	89.46
EES05366	Sorghum	plastid	88.46	88.84
Os02t0595700-01	Rice	plastid	88.46	88.65
Zm00001d050969_P001	Maize	plastid	88.25	88.63
GSMUA_AchrUn_...	Banana	cytosol	33.97	86.89
HORVU6Hr1G053680.5	Barley	plastid	93.8	85.41
CDX82758	Canola	plastid	47.44	78.17
Bra013458.1-P	Field mustard	plastid	77.56	77.23
Bra033753.1-P	Field mustard	plastid	78.21	77.22
Bra038805.1-P	Field mustard	plastid	77.78	76.63
AT4G20360.1	Thale cress	plastid	77.56	76.26
Solyc06g071790.2.1	Tomato	nucleus, plastid	73.29	76.22
CDX98668	Canola	plastid	44.87	75.81
Bra020926.1-P	Field mustard	plastid	69.02	75.64
CDY49022	Canola	plastid	55.13	75.22
Solyc03g112150.1.1	Tomato	plastid	76.5	75.05
CDY49485	Canola	plastid	54.7	74.85
PGSC0003DMT400092196	Potato	plastid	76.28	74.84
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	76.28	74.84
VIT_17s0000g09370.t01	Wine grape	plastid	77.35	74.49
CDX94002	Canola	plastid	44.87	74.2
CDX78988	Canola	plastid	47.44	73.51
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	49.15	73.48
CDY54570	Canola	plastid	48.72	73.08
CDY31442	Canola	plastid	48.5	72.76
KRH33293	Soybean	plastid	31.2	62.13
TraesCS1B01G431000.1	Wheat	cytosol	48.08	56.25
TraesCS5B01G545300.2	Wheat	cytosol	47.44	55.78
TraesCS5B01G545200.1	Wheat	mitochondrion	53.63	55.53
TraesCS2B01G097300.1	Wheat	cytosol	26.07	27.29
TraesCS2B01G097100.1	Wheat	cytosol	26.07	27.29
TraesCS4B01G196900.1	Wheat	golgi	25.85	27.07
TraesCS5B01G418100.1	Wheat	cytosol	25.85	27.07
TraesCS5B01G418200.1	Wheat	cytosol	25.85	27.07
TraesCS4B01G196800.2	Wheat	golgi	26.28	25.47
TraesCS2B01G091600.1	Wheat	cytosol	25.0	21.95
TraesCS2B01G465300.1	Wheat	cytosol	25.43	17.47
TraesCS2B01G591700.6	Wheat	cytosol	24.79	16.29

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	HAMAP:MF_00118_B	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR43721	PANTHER:PTHR43721:SF6	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485	EnsemblPlantsGene:TraesCS6B01G238600	EnsemblPlants:TraesCS6B01G238600.1	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	TIGR:cd01884	TIGR:cd03697	TIGR:cd03707
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:415729956..415731362

Molecular Weight (calculated)

50363.6 Da

IEP (calculated)

6.204

GRAVY (calculated)

-0.144

Length

468 amino acids

Sequence
(BLAST)

001: MASLAAASAS TALLFPSTSS SKPRLPLSTS LGFSAPARSR RATAVAGSSG RRPGLLVVRA ARGKFERNKP HVNIGTIGHV DHGKTTLTAA LTMVLASVGG
101: SAPKKYDEID AAPEERARGI TINTATVEYE TETRHYAHVD CPGHADYVKN MITGAAQMDG AILVVSGADG PMPQTKEHIL LAKQVGVPSI VVFLNKKDQV
201: DDEELLELVD LEVRELLTAY EYDGDNVPIV SGSALRALEA LMATPGLKRG DNEWVDGIFS LIDSVDTHIP VPQRQTDLPF LLAVEDVFSI TGRGTVATGR
301: IERGTVKVGD PVDLVGIRET RNATVTGVEM FQKTMDDAIA GDNVGLLLRG MQKEDIERGM VLAKPGSITP HTKFEAVVYV LKKEEGGRHS PFFPGYRPQF
401: YMRTTDVTGN VTNIMNDKDE EAKMCMPGDR IKMVVELIQP VACEQGMRFA IREGGKTVGA GVINNIIQ

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.