Factsheet for TraesCS4B01G196900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 16595579
extracellular: 19786127
golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

gfp, msms PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G191300.1
TraesCS4B01G124000.1
TraesCS4D01G122000.1
TraesCS5A01G144000.1
TraesCS5B01G143100.1
TraesCS5D01G148000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	TraesCS4A01G191300.1	AT3G54220.1	19228333
AT1G07920.1	TraesCS4B01G124000.1	AT3G54220.1	19228333
AT1G07920.1	TraesCS4D01G122000.1	AT3G54220.1	19228333
AT1G07920.1	TraesCS5A01G144000.1	AT3G54220.1	19228333
AT1G07920.1	TraesCS5B01G143100.1	AT3G54220.1	19228333
AT1G07920.1	TraesCS5D01G148000.1	AT3G54220.1	19228333
AT1G07930.1	TraesCS4A01G191300.1	AT3G54220.1	19228333
AT1G07930.1	TraesCS4B01G124000.1	AT3G54220.1	19228333
AT1G07930.1	TraesCS4D01G122000.1	AT3G54220.1	19228333
AT1G07930.1	TraesCS5A01G144000.1	AT3G54220.1	19228333
AT1G07930.1	TraesCS5B01G143100.1	AT3G54220.1	19228333
AT1G07930.1	TraesCS5D01G148000.1	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G056740.1	Barley	cytosol	100.0	100.0
TraesCS4D01G197200.1	Wheat	cytosol	100.0	100.0
TraesCS5B01G418100.1	Wheat	cytosol	100.0	100.0
TraesCS5B01G418200.1	Wheat	cytosol	100.0	100.0
HORVU4Hr1G056830.1	Barley	cytosol	65.32	99.66
TraesCS4A01G107600.1	Wheat	cytosol	99.33	99.33
TraesCS4A01G107700.1	Wheat	cytosol	99.33	99.33
GSMUA_Achr5P24440_001	Banana	cytosol	28.19	99.21
CDY09214	Canola	cytosol	35.35	98.75
KRH07098	Soybean	cytosol, mitochondrion, nucleus	96.87	96.87
TraesCS2B01G097100.1	Wheat	cytosol	96.87	96.87
TraesCS2B01G097300.1	Wheat	cytosol	96.87	96.87
KRG93959	Soybean	nucleus	96.64	96.64
Os03t0177400-01	Rice	cytosol	96.64	96.64
Os03t0177500-01	Rice	cytosol	96.64	96.64
Os03t0177900-01	Rice	plasma membrane	96.64	96.64
Os03t0178000-02	Rice	cytosol	96.64	96.64
Zm00001d046449_P003	Maize	cytosol	96.42	96.42
Zm00001d037882_P001	Maize	cytosol	39.82	96.22
KRH58241	Soybean	nucleus	96.2	96.2
GSMUA_Achr2P19000_001	Banana	cytosol	16.55	96.1
CDY06287	Canola	cytosol	48.77	96.04
KXG20293	Sorghum	cytosol	95.97	95.97
KXG20294	Sorghum	cytosol	95.97	95.97
KXG20296	Sorghum	cytosol	95.97	95.97
KXG20299	Sorghum	cytosol	95.97	95.97
Zm00001d037875_P014	Maize	cytosol	96.64	95.79
Zm00001d037877_P014	Maize	cytosol	96.64	95.79
Zm00001d036904_P001	Maize	cytosol	95.75	95.75
Zm00001d009870_P008	Maize	cytosol	96.42	95.57
Zm00001d037873_P010	Maize	cytosol	96.42	95.57
Zm00001d037905_P010	Maize	cytosol	96.42	95.57
KRH34904	Soybean	nucleus	95.75	95.54
PGSC0003DMT400020968	Potato	cytosol	95.53	95.53
VIT_06s0004g03240.t01	Wine grape	cytosol	95.53	95.53
Bra031601.1-P	Field mustard	cytosol	42.28	95.45
GSMUA_Achr10P...	Banana	cytosol	60.18	95.39
CDY67375	Canola	cytosol	59.28	95.32
KRH04781	Soybean	endoplasmic reticulum	95.3	95.3
KRH57863	Soybean	nucleus	95.3	95.3
PGSC0003DMT400050663	Potato	cytosol	95.3	95.3
Solyc11g069700.1.1	Tomato	nucleus	95.3	95.3
Zm00001d009868_P015	Maize	cytosol	95.97	95.12
PGSC0003DMT400053547	Potato	cytosol	95.3	95.09
PGSC0003DMT400053553	Potato	cytosol	95.3	95.09
PGSC0003DMT400059830	Potato	cytosol	95.3	95.09
PGSC0003DMT400059832	Potato	cytosol	95.3	95.09
Solyc06g005060.2.1	Tomato	cytosol	95.3	95.09
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	95.3	95.09
GSMUA_Achr10P...	Banana	cytosol	59.28	94.98
VIT_08s0040g02330.t01	Wine grape	cytosol	94.85	94.85
AT1G07920.1	Thale cress	cytosol	95.08	94.65
AT1G07930.1	Thale cress	cytosol	95.08	94.65
AT1G07940.3	Thale cress	cytosol	95.08	94.65
AT5G60390.2	Thale cress	cytosol	95.08	94.65
CDY06289	Canola	cytosol	54.14	94.53
Solyc06g009960.1.1	Tomato	cytosol	86.58	94.39
Bra002483.1-P	Field mustard	cytosol	94.41	93.99
Bra018669.1-P	Field mustard	cytosol	94.41	93.99
Bra031602.1-P	Field mustard	cytosol	94.41	93.99
CDX88757	Canola	cytosol	84.12	93.77
Bra018242.1-P	Field mustard	cytosol	94.18	93.76
Bra020253.1-P	Field mustard	cytosol	94.18	93.76
CDY09211	Canola	cytosol	89.71	93.69
CDY10804	Canola	cytosol	89.71	93.69
CDY34479	Canola	cytosol	89.71	93.69
CDY61938	Canola	cytosol	89.71	93.69
OQU75582	Sorghum	cytosol	26.17	93.6
HORVU4Hr1G056820.1	Barley	plasma membrane	99.55	93.49
Bra031605.1-P	Field mustard	cytosol	89.26	93.44
CDY22710	Canola	cytosol	89.26	93.44
CDY22711	Canola	cytosol	89.26	93.44
VIT_13s0019g03920.t01	Wine grape	cytosol	95.08	93.41
Bra006661.1-P	Field mustard	cytosol	93.51	93.1
Bra020251.1-P	Field mustard	cytosol	85.68	92.96
TraesCS4B01G196800.2	Wheat	golgi	100.0	92.55
GSMUA_Achr6P04090_001	Banana	cytosol	40.72	92.39
Zm00001d009887_P001	Maize	cytosol	29.31	89.73
GSMUA_Achr3P17840_001	Banana	cytosol	30.2	88.82
GSMUA_AchrUn_...	Banana	cytosol	41.16	88.04
CDX93604	Canola	cytosol	89.71	87.17
CDX95108	Canola	cytosol, extracellular	94.41	86.65
CDX70032	Canola	cytosol	66.67	86.63
OQU75597	Sorghum	cytosol	33.78	86.29
CDY06288	Canola	cytosol	22.15	86.09
CDY06290	Canola	cytosol	22.15	86.09
CDY67376	Canola	cytosol	22.15	86.09
CDY69678	Canola	cytosol	22.15	86.09
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	78.52	86.03
VIT_06s0004g03220.t01	Wine grape	cytosol	95.53	82.43
VIT_19s0014g04110.t01	Wine grape	cytosol	21.92	80.99
GSMUA_Achr10P...	Banana	cytosol, plastid	38.93	80.93
Bra030707.1-P	Field mustard	cytosol	94.41	71.53
CDY58828	Canola	cytosol	89.26	70.25
GSMUA_Achr6P02020_001	Banana	mitochondrion	52.8	68.21
TraesCS2B01G091600.1	Wheat	cytosol	35.57	29.83
TraesCS5B01G545300.2	Wheat	cytosol	25.5	28.64
TraesCS1B01G431000.1	Wheat	cytosol	25.5	28.5
TraesCS5B01G545200.1	Wheat	mitochondrion	27.74	27.43
TraesCS6B01G238600.1	Wheat	plastid	27.07	25.85
TraesCS2B01G465300.1	Wheat	cytosol	34.45	22.61
TraesCS2B01G591700.6	Wheat	cytosol	33.33	20.93

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	HAMAP:MF_00118_A	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00483	EnsemblPlantsGene:TraesCS4B01G196900	EnsemblPlants:TraesCS4B01G196900.1	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc
InterPro:Transl_elong_EFTu/EF1A_C	TIGR:cd01883	TIGR:cd03693	TIGR:cd03705	:	:

Description

No Description!

Coordinates

chr4B:+:424060254..424062268

Molecular Weight (calculated)

49171.8 Da

IEP (calculated)

9.661

GRAVY (calculated)

-0.273

Length

447 amino acids

Sequence
(BLAST)

001: MGKEKTHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYEEI VKEVSSYLKK VGYNPDKVPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGVI KPGMVVTFGP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GFVASNSKDD PAKEAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF AELVTKIDRR SGKELEALPK FLKNGDAGIV KMIPTKPMVV
401: ETFATYPPLG RFAVRDMRQT VAVGVIKGVE KKDPTGAKVT KAAIKKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.