Factsheet for Bra031601.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
vacuole 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	Bra007056.1-P	AT3G54220.1	19228333
AT1G07930.1	Bra007056.1-P	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P24440_001	Banana	cytosol	63.64	99.21
HORVU5Hr1G051280.1	Barley	cytosol	51.52	98.08
GSMUA_Achr2P19000_001	Banana	cytosol	37.37	96.1
Zm00001d037882_P001	Maize	cytosol	88.38	94.59
OQU75582	Sorghum	cytosol	58.59	92.8
Zm00001d009887_P001	Maize	cytosol	66.16	89.73
OQU75597	Sorghum	cytosol	73.23	82.86
VIT_19s0014g04110.t01	Wine grape	cytosol	49.49	80.99
GSMUA_Achr10P...	Banana	cytosol, plastid	85.86	79.07
CDY06287	Canola	cytosol	85.86	74.89
CDY06289	Canola	cytosol	85.86	66.41
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	35.35	66.04
GSMUA_Achr3P17840_001	Banana	cytosol	44.44	57.89
GSMUA_Achr6P02020_001	Banana	mitochondrion	94.95	54.34
AT1G07930.1	Thale cress	cytosol	97.47	42.98
Bra031602.1-P	Field mustard	cytosol	97.47	42.98
Bra018669.1-P	Field mustard	cytosol	97.47	42.98
Bra018242.1-P	Field mustard	cytosol	97.47	42.98
Bra006661.1-P	Field mustard	cytosol	97.47	42.98
Bra002483.1-P	Field mustard	cytosol	97.47	42.98
AT1G07920.1	Thale cress	cytosol	97.47	42.98
AT5G60390.2	Thale cress	cytosol	97.47	42.98
AT1G07940.3	Thale cress	cytosol	97.47	42.98
Bra020253.1-P	Field mustard	cytosol	96.97	42.76
KRH58241	Soybean	nucleus	96.46	42.73
KRG93959	Soybean	nucleus	96.46	42.73
Os03t0177400-01	Rice	cytosol	96.46	42.73
Os03t0177500-01	Rice	cytosol	96.46	42.73
Os03t0177900-01	Rice	plasma membrane	96.46	42.73
Os03t0178000-02	Rice	cytosol	96.46	42.73
PGSC0003DMT400020968	Potato	cytosol	95.96	42.51
PGSC0003DMT400050663	Potato	cytosol	95.96	42.51
Solyc11g069700.1.1	Tomato	nucleus	95.96	42.51
KXG20299	Sorghum	cytosol	95.96	42.51
KXG20296	Sorghum	cytosol	95.96	42.51
KXG20294	Sorghum	cytosol	95.96	42.51
KXG20293	Sorghum	cytosol	95.96	42.51
VIT_06s0004g03240.t01	Wine grape	cytosol	95.96	42.51
KRH07098	Soybean	cytosol, mitochondrion, nucleus	95.96	42.51
Zm00001d036904_P001	Maize	cytosol	95.96	42.51
Zm00001d046449_P003	Maize	cytosol	95.96	42.51
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	95.96	42.41
Solyc06g005060.2.1	Tomato	cytosol	95.96	42.41
PGSC0003DMT400059832	Potato	cytosol	95.96	42.41
PGSC0003DMT400059830	Potato	cytosol	95.96	42.41
PGSC0003DMT400053553	Potato	cytosol	95.96	42.41
PGSC0003DMT400053547	Potato	cytosol	95.96	42.41
VIT_08s0040g02330.t01	Wine grape	cytosol	95.45	42.28
TraesCS4B01G196900.1	Wheat	golgi	95.45	42.28
TraesCS5B01G418100.1	Wheat	cytosol	95.45	42.28
TraesCS5B01G418200.1	Wheat	cytosol	95.45	42.28
KRH04781	Soybean	endoplasmic reticulum	95.45	42.28
HORVU4Hr1G056740.1	Barley	cytosol	95.45	42.28
KRH57863	Soybean	nucleus	95.45	42.28
KRH34904	Soybean	nucleus	95.45	42.19
Zm00001d037905_P010	Maize	cytosol	95.96	42.13
Zm00001d037873_P010	Maize	cytosol	95.96	42.13
Zm00001d009870_P008	Maize	cytosol	95.96	42.13
Zm00001d009868_P015	Maize	cytosol	95.96	42.13
GSMUA_AchrUn_...	Banana	cytosol	44.44	42.11
TraesCS5A01G415600.1	Wheat	cytosol	94.95	42.06
TraesCS5A01G415400.1	Wheat	cytosol	94.95	42.06
TraesCS4A01G107600.1	Wheat	cytosol	94.95	42.06
TraesCS4A01G107700.1	Wheat	cytosol	94.95	42.06
Zm00001d037877_P014	Maize	cytosol	95.45	41.91
Zm00001d037875_P014	Maize	cytosol	95.45	41.91
VIT_13s0019g03920.t01	Wine grape	cytosol	95.96	41.76
Solyc06g009960.1.1	Tomato	cytosol	85.86	41.46
HORVU5Hr1G100200.3	Barley	mitochondrion	95.45	40.73
HORVU5Hr1G100700.3	Barley	plasma membrane	95.45	40.65
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	82.83	40.2
Bra031605.1-P	Field mustard	cytosol	85.86	39.81
HORVU4Hr1G056820.1	Barley	plasma membrane	94.95	39.5
TraesCS4B01G196800.2	Wheat	golgi	95.45	39.13
HORVU6Hr1G085320.3	Barley	cytosol	86.87	39.0
HORVU6Hr1G085370.1	Barley	cytosol	86.87	38.05
Bra020251.1-P	Field mustard	cytosol	78.28	37.62
VIT_06s0004g03220.t01	Wine grape	cytosol	95.96	36.68
Bra030707.1-P	Field mustard	cytosol	97.47	32.71
GSMUA_Achr10P...	Banana	cytosol	45.45	32.26
GSMUA_Achr10P...	Banana	cytosol	45.45	31.91
GSMUA_Achr6P04090_001	Banana	cytosol	21.72	21.83
Bra006069.1-P	Field mustard	cytosol	44.44	13.97
Bra000853.1-P	Field mustard	mitochondrion	30.3	13.24
Bra036234.1-P	Field mustard	mitochondrion	30.3	13.22
Bra033753.1-P	Field mustard	plastid	30.81	12.87
Bra038805.1-P	Field mustard	plastid	30.81	12.84
Bra013458.1-P	Field mustard	plastid	30.3	12.77
HORVU4Hr1G056830.1	Barley	cytosol	18.18	12.29
Bra016571.1-P	Field mustard	cytosol	42.42	11.85
Bra028577.1-P	Field mustard	cytosol	43.43	11.78
Bra020926.1-P	Field mustard	plastid	21.72	10.07
CDY06290	Canola	cytosol	1.01	1.74
CDY06288	Canola	cytosol	1.01	1.74

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra031601	EnsemblPlants:Bra031601.1	EnsemblPlants:Bra031601.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:G_TR_CS	InterPro:IPR000795	UniProt:M4ES23	InterPro:P-loop_NTPase	PFAM:PF00009	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom
UniParc:UPI0002543378	:	:	:	:	:

Description

AT5G60390 (E=2e-109) | elongation factor 1-alpha / EF-1-alpha

Coordinates

chrA09:-:35635672..35636364

Molecular Weight (calculated)

22393.2 Da

IEP (calculated)

9.485

GRAVY (calculated)

-0.297

Length

198 amino acids

Sequence
(BLAST)

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.