Factsheet for Bra006069.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78392	Canola	cytosol	98.41	98.73
AT5G10630.4	Thale cress	cytosol	86.35	73.22
Bra028577.1-P	Field mustard	cytosol	83.65	72.19
GSMUA_Achr1P00050_001	Banana	cytosol	49.52	70.91
Solyc12g036410.1.1	Tomato	cytosol	54.29	58.16
Solyc03g119290.2.1	Tomato	cytosol	53.81	57.65
Os04t0596500-02	Rice	cytosol	53.97	51.83
Os01t0116600-01	Rice	cytosol	53.49	51.45
EES12776	Sorghum	cytosol	54.44	50.59
VIT_03s0017g00530.t01	Wine grape	cytosol	60.63	50.26
KRH59057	Soybean	cytosol	61.9	49.18
TraesCS2D01G443300.1	Wheat	cytosol	52.7	48.82
KRH42938	Soybean	cytosol	60.79	48.67
TraesCS2A01G444100.1	Wheat	cytosol	52.54	48.6
TraesCS2B01G465300.1	Wheat	cytosol	52.38	48.46
GSMUA_Achr4P05390_001	Banana	cytosol	51.27	47.5
EES13106	Sorghum	cytosol	50.79	45.58
TraesCS2A01G592500.1	Wheat	cytosol	49.21	45.26
Os04t0677800-02	Rice	cytosol	48.89	45.16
Bra031601.1-P	Field mustard	cytosol	13.97	44.44
HORVU2Hr1G102800.6	Barley	cytosol, plastid	52.22	43.58
TraesCS2B01G591700.6	Wheat	cytosol	48.73	43.12
Zm00001d001827_P005	Maize	cytosol	46.83	42.45
HORVU2Hr1G119310.19	Barley	cytosol	46.03	42.09
Zm00001d026213_P001	Maize	cytosol	54.29	41.2
TraesCS2D01G562000.1	Wheat	cytosol	49.05	37.91
Bra006661.1-P	Field mustard	cytosol	25.08	35.19
Bra031602.1-P	Field mustard	cytosol	24.92	34.97
Bra020253.1-P	Field mustard	cytosol	24.92	34.97
Bra018669.1-P	Field mustard	cytosol	24.92	34.97
Bra018242.1-P	Field mustard	cytosol	24.92	34.97
Bra002483.1-P	Field mustard	cytosol	24.92	34.97
Bra031605.1-P	Field mustard	cytosol	23.65	34.89
Bra020251.1-P	Field mustard	cytosol	21.9	33.5
Bra013458.1-P	Field mustard	plastid	20.0	26.81
Bra038805.1-P	Field mustard	plastid	20.16	26.74
Bra020926.1-P	Field mustard	plastid	18.1	26.7
Bra030707.1-P	Field mustard	cytosol	24.92	26.61
Bra033753.1-P	Field mustard	plastid	19.52	25.95
Bra036234.1-P	Field mustard	mitochondrion	18.57	25.77
Bra000853.1-P	Field mustard	mitochondrion	18.41	25.61
Bra016571.1-P	Field mustard	cytosol	24.92	22.14

Protein Annotations

MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.20.28.140	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra006069
EnsemblPlants:Bra006069.1	EnsemblPlants:Bra006069.1-P	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	GO:GO:0046872	InterPro:IPR000795
InterPro:IPR001876	UniProt:M4CPD1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144
PRINTS:PR00315	ScanProsite:PS01358	PFscan:PS50199	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF219
SMART:SM00547	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	SUPFAM:SSF90209	InterPro:TF_GTP-bd_dom
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000253F899	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf
SEG:seg	:	:	:	:	:

Description

AT5G10630 (E=6e-277) | elongation factor 1-alpha, putative / EF-1-alpha, putative

Coordinates

chrA03:+:1855837..1858703

Molecular Weight (calculated)

68912.4 Da

IEP (calculated)

6.363

GRAVY (calculated)

-0.432

Length

630 amino acids

Sequence
(BLAST)

001: MPRKGFSNFD DYDDGFDDDD AYDYDYDDDD EHEESEQKEV EIAQQGVWRC GICTYDNDES MNVCDICGAI RHDTVAGGNQ TIINNNTSSM KQKERQDTSV
101: HNPLKKERDR SETSSQGRHA HIGGVKSSKS LPKAKADTSH ETTSSSKNME ASESLTSTMN KMSLTGETET SRDIKTRSAR SKSNHKPEEW MLLDKESDTL
201: TQLNLAIVGH VDSGKSTLSG RLLHLLGRIS QKQMHKFEKE AKLQGKGSFA YAWALDESAE ERERGITMTV AVAYFNTKRH HVVLLDSPGH KDFVPNMIAG
301: ATQADAAILV VDASIGAFEA GFDNLKGQTR EHARVLRGFG VEQVIVAVNK MDIVGYSKER FDLIKQHVGS FLQSCRFKES SLTWVPLSAM ENQNLVSAPS
401: ESRLSSWYQG PCLLDAVDSV NSPGRDVSKP LLMPLCDVVK SNSHGQVSAC GKLEAGAVRS GSKIMVMPSG EQGTVRSLER DSQGCTIARA GDNVAIALQG
501: IDANQVMAGG VLCHPDYPVS VATHLELMVL VLEGATPILL GSQLEFHVHH AKEAATVVKL VAMLDPKTGE PTKKSPRCLT AKQSAMLEVS LHYPVCVETF
601: SESRALGRVF LRSSGRTVAM GKITRIIQDS

Best Arabidopsis Sequence Match ( AT5G10630.1 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEAAAE PKEEIAKTQG LWRCAICTYD NVETMFVCDI CGVLRHPVAG NQSINKNTAP FKFDAPSPDD
101: LVSNGLTSSK TGPKGSGDAS MRQKEKQDSV EQKPLKKGGD SSETSSRGRH DKLDDKGGAG GIKSGKSLPK AKADMSNETS SSSKYMETSE SLTGTMNKMS
201: LIGETENSSD IKIRGPKSQS KHKPEEWMLL DKESDALSQL NLAIVGHVDS GKSTLSGRLL HLLGRISQKQ MHKYEKEAKL QGKGSFAYAW ALDESAEERE
301: RGITMTVAVA YFNSKRHHVV LLDSPGHKDF VPNMIAGATQ ADAAILVIDA SVGAFEAGFD NLKGQTREHA RVLRGFGVEQ VIVAINKMDI VGYSKERFDL
401: IKQHVGSFLQ SCRFKDSSLT WIPLSAMENQ NLVAAPSDNR LSSWYQGPCL LDAVDSVKSP DRDVSKPLLM PICDAVRSTS QGQVSACGKL EAGAVRPGSK
501: VMVMPSGDQG TIRSLERDSQ ACTIARAGDN VALALQGIDA NQVMAGDVLC HPDFPVSVAT HLELMVLVLE GATPILLGSQ LEFHVHHAKE AATVVKLVAM
601: LDPKTGQPTK KSPRCLTAKQ SAMLEVSLQN PVCVETFSES RALGRVFLRS SGRTVAMGKV TRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.