Factsheet for TraesCS2D01G443300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G444100.1	Wheat	cytosol	98.38	98.24
TraesCS2B01G465300.1	Wheat	cytosol	98.09	97.94
HORVU2Hr1G102800.6	Barley	cytosol, plastid	95.44	85.96
Os04t0596500-02	Rice	cytosol	79.41	82.32
Os01t0116600-01	Rice	cytosol	78.97	81.98
GSMUA_Achr1P00050_001	Banana	cytosol	48.82	75.45
EES12776	Sorghum	cytosol	75.0	75.22
Zm00001d026213_P001	Maize	cytosol	75.0	61.45
Solyc12g036410.1.1	Tomato	cytosol	47.5	54.93
CDY61091	Canola	cytosol	10.59	53.73
Solyc03g119290.2.1	Tomato	cytosol	45.74	52.89
CDX78392	Canola	cytosol	48.68	52.71
Bra006069.1-P	Field mustard	cytosol	48.82	52.7
CDX70362	Canola	cytosol	49.71	51.92
VIT_03s0017g00530.t01	Wine grape	cytosol	57.65	51.58
CDY40108	Canola	cytosol	51.18	48.4
CDX85751	Canola	cytosol	50.59	48.18
AT5G10630.4	Thale cress	cytosol	51.03	46.7
KRH59057	Soybean	cytosol	54.12	46.41
KRH42938	Soybean	cytosol	53.38	46.12
Bra028577.1-P	Field mustard	cytosol	48.97	45.62
TraesCS2D01G320300.1	Wheat	cytosol, nucleus, plastid	10.29	44.03
TraesCS2D01G562000.1	Wheat	cytosol	49.41	41.23
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	5.59	35.85
TraesCS2D01G080800.1	Wheat	cytosol	22.65	34.45
TraesCS2D01G080900.1	Wheat	cytosol, golgi, unclear	22.65	34.45
TraesCS4D01G197100.1	Wheat	cytosol	22.65	34.45
TraesCS4D01G197200.1	Wheat	cytosol	22.65	34.45
TraesCS5D01G423300.1	Wheat	cytosol	22.65	34.45
TraesCS5D01G423400.1	Wheat	cytosol	22.65	34.45
TraesCS2D01G320500.1	Wheat	cytosol	18.24	33.6
TraesCS2D01G075300.1	Wheat	cytosol	24.41	31.14
TraesCS5D01G542300.1	Wheat	mitochondrion	18.09	27.27
TraesCS6D01G193000.1	Wheat	nucleus, plastid	17.79	25.74

Protein Annotations

MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.20.28.140	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:IPR000795	InterPro:IPR001876	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PRINTS:PR00315
ScanProsite:PS01358	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF219	SMART:SM00547	SUPFAM:SSF50447
SUPFAM:SSF50465	SUPFAM:SSF52540	SUPFAM:SSF90209	InterPro:TF_GTP-bd_dom	EnsemblPlantsGene:TraesCS2D01G443300	EnsemblPlants:TraesCS2D01G443300.1
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	TIGR:cd01883
TIGR:cd04093	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:554125084..554130774

Molecular Weight (calculated)

74161.9 Da

IEP (calculated)

6.629

GRAVY (calculated)

-0.336

Length

680 amino acids

Sequence
(BLAST)

001: MPRKVVSGPD YDDDYADYED YEDDYDDYDE TEHADVKPPV KEKESSKKSS NTVPVLWKCS MCTFDNHETM VYCEMCGVFR ESFVKSGKDV SIKVESVNGI
101: SNNSGTSALS NSDSTKMPAK TSTTNFDGDS ERKYASTSHD KVNSTQLASV GSSSSTGKKK QPVIFDNNVP IERTTQLNAD HFQLKEDQGS SRASSSAQNK
201: GSMETLSSDI SQLSIERNNV NVAQPLPEEY KPEGWMLADQ ESGVLSQLNL AIVGHVDSGK STLSGRLLHL LGKISKRDMH KNEKEAKEKG KGSFAYAWAM
301: DESTEERARG ITMTVAVAYL ETKKYRVVLL DSPGHKDFVP NLISGATQAD AAILVVDAST GSFESGMDGE GGKSVGQTKE HAQLIRSFGV EQLIVAVNKM
401: DAIGYSKDRL EFIKVRLGSF LRSCNFRDSA VTWIPLSAVE NQNLIKSPSD ARFTSWYQGS CLLDAIDSLQ LPSRDVSKPL ILPICDVIKS QSTGQLAAFG
501: KLETGAIRNG SKVLVLPCEE VATVKTIERD SSSCSIARAG DNVAVILQGI DGSRIIPGGI LCHPGFPVPV ANYLELKIRV LDIAIPILIG YQVEFHIHHV
601: KEAARVTKIV ALLDKTGKPS KTAPRFLKSK QNAVVQVTLD QAVCVEEFSK CRALGRAFLR SSGSTIAVGI VTKIMRQDQH

Best Arabidopsis Sequence Match ( AT5G10630.2 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEEAAA EPKEEIAKTQ GLWRCAICTY DNVETMFVCD ICGVLRHPVA GNQSINKNTA PFKFDAPSPD
101: DLVSNGLTSS KTGPKGSGDA SMRQKEKQDS VEQKPLKKGG DSSETSSRGR HDKLDDKGGA GGIKSGKSLP KAKADMSNET SSSSKYMETS ESLTGTMNKM
201: SLIGETENSS DIKIRGPKSQ SKHKPEEWML LDKESDALSQ LNLAIVGHVD SGKSTLSGRL LHLLGRISQK QMHKYEKEAK LQGKGSFAYA WALDESAEER
301: ERGITMTVAV AYFNSKRHHV VLLDSPGHKD FVPNMIAGAT QADAAILVID ASVGAFEAGF DNLKGQTREH ARVLRGFGVE QVIVAINKMD IVGYSKERFD
401: LIKQHVGSFL QSCRFKDSSL TWIPLSAMEN QNLVAAPSDN RLSSWYQGPC LLDAVDSVKS PDRDVSKPLL MPICDAVRST SQGQVSACGK LEAGAVRPGS
501: KVMVMPSGDQ GTIRSLERDS QACTIARAGD NVALALQGID ANQVMAGDVL CHPDFPVSVA THLELMVLVL EGATPILLGS QLEFHVHHAK EAATVVKLVA
601: MLDPKTGQPT KKSPRCLTAK QSAMLEVSLQ NPVCVETFSE SRALGRVFLR SSGRTVAMGK VTRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.