Factsheet for TraesCS2D01G080900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G083000.1	Wheat	cytosol	100.0	100.0
TraesCS2B01G097100.1	Wheat	cytosol	100.0	100.0
TraesCS2B01G097300.1	Wheat	cytosol	100.0	100.0
TraesCS2D01G080800.1	Wheat	cytosol	100.0	100.0
HORVU0Hr1G017020.1	Barley	cytosol	98.43	98.43
HORVU2Hr1G013680.1	Barley	cytosol, plasma membrane	98.43	98.43
TraesCS5D01G423400.1	Wheat	cytosol	96.87	96.87
TraesCS5D01G423300.1	Wheat	cytosol	96.87	96.87
TraesCS4D01G197200.1	Wheat	cytosol	96.87	96.87
TraesCS4D01G197100.1	Wheat	cytosol	96.87	96.87
EER97380	Sorghum	cytosol	95.53	95.53
Zm00001d021788_P001	Maize	cytosol, extracellular, plasma membrane, plastid	94.85	94.85
Zm00001d006596_P001	Maize	cytosol	94.63	94.63
TraesCS2D01G320300.1	Wheat	cytosol, nucleus, plastid	30.2	84.91
TraesCS2D01G320500.1	Wheat	cytosol	68.23	82.66
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	15.66	66.04
TraesCS2D01G075300.1	Wheat	cytosol	35.12	29.46
TraesCS5D01G542300.1	Wheat	mitochondrion	27.07	26.83
TraesCS6D01G193000.1	Wheat	nucleus, plastid	27.29	25.96
TraesCS2D01G443300.1	Wheat	cytosol	34.45	22.65
TraesCS2D01G562000.1	Wheat	cytosol	33.56	18.4

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	HAMAP:MF_00118_A	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00483	EnsemblPlantsGene:TraesCS2D01G080900	EnsemblPlants:TraesCS2D01G080900.1	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc
InterPro:Transl_elong_EFTu/EF1A_C	TIGR:cd01883	TIGR:cd03693	TIGR:cd03705	SEG:seg	:

Description

No Description!

Coordinates

chr2D:+:34981830..34984090

Molecular Weight (calculated)

49130.6 Da

IEP (calculated)

9.661

GRAVY (calculated)

-0.288

Length

447 amino acids

Sequence
(BLAST)

001: MGKEKIHISI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYSCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYEEI VKEVSSYLKK VGYNPDKVPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGVI KPGMVVTFGP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKEAANFTA QVIIMNHPGQ ISNGYAPVLD CHTSHIAVKF AEIQTKIDRR SGKEIEAAPK FLKNGDAGFV KMIPTKPMVV
401: ETFAQYPPLG RFAVRDMRQT VAVGVIKAVE KKDPTGAKVT KAAAKKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.