CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021788_P001	Maize	cytosol, extracellular, plasma membrane, plastid	99.33	99.33
Zm00001d006596_P001	Maize	cytosol	99.11	99.11
KXG20299	Sorghum	cytosol	96.42	96.42
KXG20296	Sorghum	cytosol	96.42	96.42
KXG20294	Sorghum	cytosol	96.42	96.42
KXG20293	Sorghum	cytosol	96.42	96.42
TraesCS2A01G083300.1	Wheat	cytosol, golgi	95.75	95.75
TraesCS2A01G083000.1	Wheat	cytosol	95.53	95.53
TraesCS2B01G097100.1	Wheat	cytosol	95.53	95.53
TraesCS2B01G097300.1	Wheat	cytosol	95.53	95.53
TraesCS2D01G080800.1	Wheat	cytosol	95.53	95.53
TraesCS2D01G080900.1	Wheat	cytosol, golgi, unclear	95.53	95.53
HORVU2Hr1G013680.1	Barley	cytosol, plasma membrane	95.3	95.3
HORVU0Hr1G017020.1	Barley	cytosol	95.3	95.3
OQU75582	Sorghum	cytosol	25.95	92.8
OQU75597	Sorghum	cytosol	33.33	85.14
EES10540	Sorghum	cytosol	36.91	30.67
EER90508	Sorghum	mitochondrion	28.41	28.04
EES05366	Sorghum	plastid	27.07	25.97
EES12776	Sorghum	cytosol	35.57	23.45
EES13106	Sorghum	cytosol	35.12	22.36

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EntrezGene:8081751	UniProt:C5XBK5	EnsemblPlants:EER97380
ProteinID:EER97380	ProteinID:EER97380.1	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	HAMAP:MF_00118_A	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115
PANTHER:PTHR23115:SF230	EnsemblPlantsGene:SORBI_3002G339600	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	unigene:Sbi.3437
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C
UniParc:UPI000189D129	RefSeq:XP_002460859.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:70672864..70675854

Molecular Weight (calculated)

49257.7 Da

IEP (calculated)

9.568

GRAVY (calculated)

-0.320

Length

447 amino acids

Sequence
(BLAST)

001: MGKEKVHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVRQMIC CCNKMDATTP KYSKARYDEI VKEVGSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGLI KPGMVVTFGP TGLTTEVKSV EMHHESMQEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKEAASFTA QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SELLTKIDRR SGKELESAPK FLKNGDAGFV KMIPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVE KKDPTGAKVT KAAAKKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.