Factsheet for HORVU2Hr1G013680.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G017020.1	Barley	cytosol	100.0	100.0
TraesCS2A01G083300.1	Wheat	cytosol, golgi	99.11	99.11
HORVU5Hr1G051280.1	Barley	cytosol	23.04	99.04
TraesCS2D01G080900.1	Wheat	cytosol, golgi, unclear	98.43	98.43
TraesCS2D01G080800.1	Wheat	cytosol	98.43	98.43
TraesCS2B01G097300.1	Wheat	cytosol	98.43	98.43
TraesCS2B01G097100.1	Wheat	cytosol	98.43	98.43
TraesCS2A01G083000.1	Wheat	cytosol	98.43	98.43
HORVU4Hr1G056740.1	Barley	cytosol	96.42	96.42
HORVU4Hr1G056830.1	Barley	cytosol	62.86	95.9
EER97380	Sorghum	cytosol	95.3	95.3
Zm00001d021788_P001	Maize	cytosol, extracellular, plasma membrane, plastid	94.63	94.63
Zm00001d006596_P001	Maize	cytosol	94.41	94.41
HORVU5Hr1G100200.3	Barley	mitochondrion	96.42	92.89
HORVU5Hr1G100700.3	Barley	plasma membrane	96.42	92.69
HORVU6Hr1G085320.3	Barley	cytosol	90.16	91.38
HORVU4Hr1G056820.1	Barley	plasma membrane	96.42	90.55
HORVU6Hr1G085370.1	Barley	cytosol	89.49	88.5
HORVU2Hr1G012860.1	Barley	cytosol	35.12	32.24
HORVU3Hr1G020770.1	Barley	cytosol	10.29	29.11
HORVU5Hr1G122350.1	Barley	cytosol	19.91	28.99
HORVU0Hr1G026370.1	Barley	mitochondrion	11.19	22.62
HORVU2Hr1G079480.2	Barley	cytosol, plastid	12.75	21.43
HORVU6Hr1G053680.5	Barley	plastid	23.94	20.82
HORVU2Hr1G102800.6	Barley	cytosol, plastid	34.68	20.53
HORVU2Hr1G040960.1	Barley	mitochondrion	10.96	20.5
HORVU2Hr1G119310.19	Barley	cytosol	31.32	20.32
HORVU2Hr1G040970.1	Barley	mitochondrion	11.19	11.04

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	EnsemblPlantsGene:HORVU2Hr1G013680	EnsemblPlants:HORVU2Hr1G013680.1	InterPro:IPR000795
UniProt:M0Y9X7	HAMAP:MF_00118_A	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447
SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C
InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0001B63F7A	:	:	:

Description

Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:M0Y9X7]

Coordinates

chrchr2H:+:29621821..29625136

Molecular Weight (calculated)

49190.7 Da

IEP (calculated)

9.661

GRAVY (calculated)

-0.295

Length

447 amino acids

Sequence
(BLAST)

001: MGKEKIHISI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYSCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKSRYDEI VKEVSSYLKK VGYNPDKVPF VPISGFEGDN
201: MIERSSNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGVI KPGMVVTFGP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKEAANFTA QVIIMNHPGQ ISNGYAPVLD CHTSHIAVKF AEIQTKIDRR SGKELEAAPK FLKNGDAGFV KMIPTKPMVV
401: ETFAQYPPLG RFAVRDMRQT VAVGVIKSVE KKEPTGAKVT KAAIKKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.