Factsheet for HORVU6Hr1G053680.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G193000.1	Wheat	nucleus, plastid	85.99	94.04
TraesCS6A01G209800.1	Wheat	plastid	85.8	93.83
TraesCS6B01G238600.1	Wheat	plastid	85.41	93.8
GSMUA_AchrUn_...	Banana	cytosol	30.93	86.89
Zm00001d017092_P001	Maize	plastid	76.85	84.95
EES05366	Sorghum	plastid	76.46	84.33
Os02t0595700-01	Rice	plastid	76.46	84.15
Zm00001d050969_P001	Maize	plastid	76.07	83.91
CDX82758	Canola	plastid	43.19	78.17
CDX98668	Canola	plastid	40.86	75.81
CDY49022	Canola	plastid	50.39	75.51
CDY49485	Canola	plastid	50.0	75.15
CDX94002	Canola	plastid	40.86	74.2
CDX78988	Canola	plastid	43.19	73.51
CDY54570	Canola	plastid	44.16	72.76
Bra013458.1-P	Field mustard	plastid	66.34	72.55
CDY31442	Canola	plastid	43.97	72.44
Bra033753.1-P	Field mustard	plastid	66.73	72.36
Bra038805.1-P	Field mustard	plastid	66.54	72.0
AT4G20360.1	Thale cress	plastid	66.15	71.43
Solyc06g071790.2.1	Tomato	nucleus, plastid	61.87	70.67
Solyc03g112150.1.1	Tomato	plastid	65.56	70.65
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	65.37	70.44
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	42.8	70.29
PGSC0003DMT400092196	Potato	plastid	65.18	70.23
Bra020926.1-P	Field mustard	plastid	58.17	70.02
VIT_17s0000g09370.t01	Wine grape	plastid	65.95	69.75
KRH33293	Soybean	plastid	24.9	54.47
HORVU5Hr1G122350.1	Barley	cytosol	32.3	54.07
HORVU3Hr1G020770.1	Barley	cytosol	15.37	50.0
HORVU0Hr1G026370.1	Barley	mitochondrion	17.12	39.82
HORVU2Hr1G079480.2	Barley	cytosol, plastid	20.43	39.47
HORVU2Hr1G040960.1	Barley	mitochondrion	16.93	36.4
HORVU4Hr1G056830.1	Barley	cytosol	13.81	24.23
HORVU4Hr1G056740.1	Barley	cytosol	20.82	23.94
HORVU2Hr1G013680.1	Barley	cytosol, plasma membrane	20.82	23.94
HORVU0Hr1G017020.1	Barley	cytosol	20.82	23.94
HORVU6Hr1G085320.3	Barley	cytosol	20.23	23.58
HORVU5Hr1G100700.3	Barley	plasma membrane	21.21	23.44
HORVU5Hr1G100200.3	Barley	mitochondrion	21.01	23.28
HORVU4Hr1G056820.1	Barley	plasma membrane	21.4	23.11
HORVU6Hr1G085370.1	Barley	cytosol	20.23	23.01
HORVU5Hr1G051280.1	Barley	cytosol	4.47	22.12
HORVU2Hr1G012860.1	Barley	cytosol	19.84	20.94
HORVU2Hr1G040970.1	Barley	mitochondrion	16.93	19.21
HORVU2Hr1G102800.6	Barley	cytosol, plastid	21.79	14.83
HORVU2Hr1G119310.19	Barley	cytosol	19.46	14.51

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:A0A287U6Y1	ncoils:Coil	InterPro:EFTU_2
InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	EnsemblPlantsGene:HORVU6Hr1G053680
EnsemblPlants:HORVU6Hr1G053680.5	InterPro:IPR000795	HAMAP:MF_00118_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143
PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43721	PANTHER:PTHR43721:SF6
SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI000B47ADF2	SEG:seg	:

Description

Elongation factor Tu [Source:UniProtKB/TrEMBL;Acc:A0A287U6Y1]

Coordinates

chrchr6H:-:336377832..336379785

Molecular Weight (calculated)

52611.3 Da

IEP (calculated)

7.031

GRAVY (calculated)

-0.194

Length

514 amino acids

Sequence
(BLAST)

001: DKRTPLPSPS RPLSLSIPSS PLPPPRAPAA APPASSPLPP EKPSPMASLA AASASTALLF PPSTSSSKPR LPLSTSLGFS APARSRRATA AAGSSGRRPG
101: LLVVRAARGK FERNKPHVNI GTIGHVDHGK TTLTAALTMV LASVGGSAPK KYDEIDAAPE ERARGITINT ATVEYETETR HYAHVXXXXX XXXXXXXXXX
201: XXXXXXXXLV VSGADGPMPQ TKEHILLAKQ VGVPSIVVFL NKKDQVDDEE LLELVDLEVR ELLTAYEYDG DNVPIVSGSA LRALEALMAT PGLKRGDNEW
301: VDGIFSLIDS VDTHIPVPQR QTDLPFLLAV EDVFSITGRG TVATGRIERG TVKVGDPVDL VGIRETRNAT VTGVEMFQKT MDDAIAGDNV GLLLRGMQKE
401: DIERGMVLAK PGSITPHTKF EAVVYVLKKE EGGRHSPFFP GYRPQFYMRT TDVTGNVTNI MNDKDEEAKM CMPGDRIKMV VELIQPVACE QGMRFAIREG
501: GKTVGAGVIN NIIQ

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.