CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94002	Canola	plastid	99.64	97.53
GSMUA_AchrUn_...	Banana	cytosol	61.73	93.44
CDX82758	Canola	plastid	90.61	88.38
CDX78988	Canola	plastid	94.58	86.75
CDY54570	Canola	plastid	95.31	84.62
CDY31442	Canola	plastid	94.22	83.65
CDY49485	Canola	plastid	90.25	73.1
CDY49022	Canola	plastid	90.25	72.89
Bra038805.1-P	Field mustard	plastid	98.19	57.26
AT4G20360.1	Thale cress	plastid	94.58	55.04
Solyc06g071790.2.1	Tomato	nucleus, plastid	80.14	49.33
KRH03857	Soybean	plastid	79.06	48.99
KRH57147	Soybean	plastid	83.75	48.43
VIT_17s0000g09370.t01	Wine grape	plastid	84.48	48.15
PGSC0003DMT400092196	Potato	plastid	80.51	46.75
Solyc03g112150.1.1	Tomato	plastid	80.14	46.54
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	80.14	46.54
TraesCS6B01G238600.1	Wheat	plastid	75.81	44.87
Zm00001d017092_P001	Maize	plastid	75.09	44.73
TraesCS6A01G209800.1	Wheat	plastid	75.81	44.68
TraesCS6D01G193000.1	Wheat	nucleus, plastid	75.81	44.68
Zm00001d050969_P001	Maize	plastid	74.73	44.42
Os02t0595700-01	Rice	plastid	74.73	44.33
EES05366	Sorghum	plastid	74.37	44.21
HORVU6Hr1G053680.5	Barley	plastid	75.81	40.86
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	38.99	34.5
CDX90912	Canola	mitochondrion	55.6	34.0
CDY22085	Canola	mitochondrion	55.6	33.85
CDY17978	Canola	mitochondrion	55.23	33.77
CDY21923	Canola	mitochondrion	54.87	33.33
CDY62618	Canola	endoplasmic reticulum, mitochondrion	39.35	29.22
CDX70032	Canola	cytosol	24.19	19.48
CDY06290	Canola	cytosol	7.58	18.26
CDY06288	Canola	cytosol	7.58	18.26
CDY69678	Canola	cytosol	7.58	18.26
CDY67376	Canola	cytosol	7.58	18.26
CDY22710	Canola	cytosol	23.47	15.22
CDY22711	Canola	cytosol	23.47	15.22
CDX95108	Canola	cytosol, extracellular	25.99	14.78
CDY10804	Canola	cytosol	22.74	14.72
CDY34479	Canola	cytosol	22.74	14.72
CDY61938	Canola	cytosol	22.74	14.72
CDY09211	Canola	cytosol	22.74	14.72
CDX88757	Canola	cytosol	20.94	14.46
CDX93604	Canola	cytosol	23.1	13.91
CDY58828	Canola	cytosol	23.47	11.44
CDY67375	Canola	cytosol	11.19	11.15
CDX78392	Canola	cytosol	25.27	11.15
CDX96737	Canola	cytosol	20.58	11.0
CDX70362	Canola	cytosol	25.63	10.91
CDX83874	Canola	endoplasmic reticulum	19.86	10.62
CDX85751	Canola	cytosol	25.99	10.08
CDY19192	Canola	cytosol	19.49	9.94
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	20.58	9.76
CDY40108	Canola	cytosol	25.27	9.74
CDY21721	Canola	cytosol	20.22	9.72
CDY06289	Canola	cytosol	8.66	9.38
CDY26187	Canola	golgi, vacuole	19.49	9.23
CDY61091	Canola	cytosol	3.25	6.72
CDY06287	Canola	cytosol	4.33	5.29
CDY09214	Canola	cytosol	2.89	5.0

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	GO:A0A078EH61	EnsemblPlants:CDX98668	ProteinID:CDX98668	ProteinID:CDX98668.1
ncoils:Coil	InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	EnsemblPlantsGene:GSBRNA2T00106724001	InterPro:G_TR_CS	PFAM:PF03143	PFAM:PF03144	ScanProsite:PS00301
PANTHER:PTHR43721	PANTHER:PTHR43721:SF13	SUPFAM:SSF50447	SUPFAM:SSF50465	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C
InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0004EE4C3F	SEG:seg	:	:	:

Description

BnaA03g44530D

Coordinates

chrLK031906:+:576578..578336

Molecular Weight (calculated)

30219.7 Da

IEP (calculated)

6.557

GRAVY (calculated)

-0.046

Length

277 amino acids

Sequence
(BLAST)

001: MAISACSSSS RLISPPSLRP AISTSTNLKT LNLSSSFLPP FTSLSYDEID AAPEERARGI TINTATIYEL MDAVDSYIPI PQRQTELPFL LAVEDVFSIT
101: GRGTVATGRV ERGTVKVGET VDLVGLRETR NYTVTGVEMF QKILDEALAG DNVGLLLRGI QKADIQRGMV LAKPGSITPH TKFEAIVYVL KKEEGGRHSP
201: FFAGYRPQFY MRTTDVTGKV TKIMNDKDEE SKMVMPGDRV KIVVELIVPV ACEQGMRFAI REGGKTVGAG VIQSIIE

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.