CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000853.1-P	Field mustard	mitochondrion	100.0	100.0
CDX90912	Canola	mitochondrion	99.56	99.56
CDY21923	Canola	mitochondrion	98.23	97.59
CDY22085	Canola	mitochondrion	97.79	97.36
AT4G02930.1	Thale cress	mitochondrion	94.7	94.49
Solyc09g073000.2.1	Tomato	plastid	86.53	87.11
PGSC0003DMT400009804	Potato	mitochondrion	86.31	86.89
KRG95471	Soybean	nucleus	84.33	84.51
PGSC0003DMT400037909	Potato	plastid	83.89	84.26
Solyc06g008940.2.1	Tomato	unclear	83.66	84.04
HORVU5Hr1G122350.1	Barley	cytosol	56.73	83.71
KRH67153	Soybean	nucleus	83.89	83.7
GSMUA_Achr3P24830_001	Banana	mitochondrion	82.56	82.2
GSMUA_Achr8P06040_001	Banana	mitochondrion	82.12	81.76
Os03t0851100-01	Rice	mitochondrion	80.13	80.13
Zm00001d034856_P003	Maize	mitochondrion	79.03	79.2
EER90508	Sorghum	mitochondrion	78.81	78.81
TraesCS4A01G330400.1	Wheat	mitochondrion	78.15	78.32
TraesCS5D01G542300.1	Wheat	mitochondrion	77.92	78.27
TraesCS5B01G545200.1	Wheat	mitochondrion	77.92	78.1
TraesCS1B01G431000.1	Wheat	cytosol	66.45	75.25
Zm00001d012846_P005	Maize	mitochondrion	75.28	75.11
Zm00001d040673_P001	Maize	mitochondrion	18.1	71.93
TraesCS5B01G545300.2	Wheat	cytosol	62.91	71.61
CDY62618	Canola	endoplasmic reticulum, mitochondrion	51.43	62.47
CDX82758	Canola	plastid	35.54	56.69
CDX98668	Canola	plastid	33.77	55.23
CDY49485	Canola	plastid	40.84	54.09
CDX94002	Canola	plastid	33.77	54.06
CDY49022	Canola	plastid	40.84	53.94
CDX78988	Canola	plastid	34.44	51.66
CDY31442	Canola	plastid	35.54	51.6
CDY54570	Canola	plastid	35.54	51.6
CDY09214	Canola	cytosol	11.92	33.75
VIT_12s0034g01800.t01	Wine grape	cytosol	26.27	32.25
CDY06289	Canola	cytosol	17.66	31.25
CDY67375	Canola	cytosol	18.32	29.86
CDY06287	Canola	cytosol	14.79	29.52
CDX88757	Canola	cytosol	23.84	26.93
CDY22711	Canola	cytosol	25.17	26.7
CDY22710	Canola	cytosol	25.17	26.7
CDY61938	Canola	cytosol	25.17	26.64
CDY34479	Canola	cytosol	25.17	26.64
CDY09211	Canola	cytosol	25.17	26.64
CDY10804	Canola	cytosol	25.17	26.64
CDX95108	Canola	cytosol, extracellular	26.93	25.05
CDX93604	Canola	cytosol	25.17	24.78
CDX70032	Canola	cytosol	17.88	23.55
CDX83874	Canola	endoplasmic reticulum	24.5	21.43
CDX96737	Canola	cytosol	24.06	21.04
CDY61091	Canola	cytosol	5.96	20.15
CDY58828	Canola	cytosol	25.17	20.07
CDY19192	Canola	cytosol	23.4	19.52
CDY21721	Canola	cytosol	24.28	19.1
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	24.28	18.84
CDX78392	Canola	cytosol	26.05	18.79
CDX70362	Canola	cytosol	26.71	18.59
CDY26187	Canola	golgi, vacuole	23.4	18.12
CDY06288	Canola	cytosol	4.42	17.39
CDY06290	Canola	cytosol	4.42	17.39
CDY69678	Canola	cytosol	4.42	17.39
CDY67376	Canola	cytosol	4.42	17.39
CDX85751	Canola	cytosol	26.49	16.81
CDY40108	Canola	cytosol	25.83	16.27

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:A0A078G020	UniProt:A0A078G020	EnsemblPlants:CDY17978
ProteinID:CDY17978	ProteinID:CDY17978.1	InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00002353001	InterPro:G_TR_CS	InterPro:IPR000795	HAMAP:MF_00118_B	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR43721	PANTHER:PTHR43721:SF12	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C
InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI000254058C	SEG:seg	:	:	:

Description

BnaC03g30500DElongation factor Tu [Source:UniProtKB/TrEMBL;Acc:A0A078G020]

Coordinates

chrLK032080:+:302956..305717

Molecular Weight (calculated)

49148.6 Da

IEP (calculated)

6.520

GRAVY (calculated)

-0.109

Length

453 amino acids

Sequence
(BLAST)

001: MASVALRNPT SKRLLPFSTQ IYSRCGGSIS SSPSISHSIG GGDDLSPSSF GASLWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LCALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKAFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLKDGPP MKSTVTGVEM FKKILDNGQA GDNVGLLLRG LKREDIQRGM VIAKPGSCKT YKKFEAEIYV LTKDEGGRHT AFLSNYRPQF YLRTADITGR
401: VELPDDVKMV MPGDNVTAVF ELIMPVPLEI GQRFALREGG RTVGAGVVSK VMT

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.