CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 29364282

msms PMID: 29364282 doi

S Pahlow, A Ostendorp, L Krüßel, J Kehr

Molecular Plant Genetics, Universität Hamburg., Molecular Plant Genetics, Universität Hamburg; julia.kehr@uni-hamburg.de.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09211	Canola	cytosol	87.68	99.77
CDY10804	Canola	cytosol	87.68	99.77
CDY34479	Canola	cytosol	87.68	99.77
CDY61938	Canola	cytosol	87.68	99.77
CDX88757	Canola	cytosol	82.14	99.75
CDY22710	Canola	cytosol	87.27	99.53
CDY22711	Canola	cytosol	87.27	99.53
GSMUA_Achr5P24440_001	Banana	cytosol	25.87	99.21
CDY06288	Canola	cytosol	23.41	99.13
CDY06290	Canola	cytosol	23.41	99.13
CDY67376	Canola	cytosol	23.41	99.13
CDY69678	Canola	cytosol	23.41	99.13
CDY09214	Canola	cytosol	32.44	98.75
CDY67375	Canola	cytosol	56.26	98.56
HORVU5Hr1G051280.1	Barley	cytosol	20.94	98.08
CDY06287	Canola	cytosol	45.59	97.8
CDY06289	Canola	cytosol	50.92	96.88
KRG93959	Soybean	nucleus	88.71	96.64
KRH58241	Soybean	nucleus	88.71	96.64
KRH07098	Soybean	cytosol, mitochondrion, nucleus	88.3	96.2
Os03t0177400-01	Rice	cytosol	88.3	96.2
Os03t0177500-01	Rice	cytosol	88.3	96.2
Os03t0177900-01	Rice	plasma membrane	88.3	96.2
Os03t0178000-02	Rice	cytosol	88.3	96.2
GSMUA_Achr2P19000_001	Banana	cytosol	15.2	96.1
CDX93604	Canola	cytosol	90.76	96.09
Solyc06g005060.2.1	Tomato	cytosol	88.3	95.98
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	88.3	95.98
KRH34904	Soybean	nucleus	88.09	95.76
KXG20293	Sorghum	cytosol	87.89	95.75
KXG20294	Sorghum	cytosol	87.89	95.75
KXG20296	Sorghum	cytosol	87.89	95.75
KXG20299	Sorghum	cytosol	87.89	95.75
PGSC0003DMT400050663	Potato	cytosol	87.89	95.75
VIT_06s0004g03240.t01	Wine grape	cytosol	87.89	95.75
Zm00001d036904_P001	Maize	cytosol	87.89	95.75
Zm00001d037882_P001	Maize	cytosol	36.34	95.68
Solyc11g069700.1.1	Tomato	nucleus	87.68	95.53
PGSC0003DMT400053547	Potato	cytosol	87.68	95.31
PGSC0003DMT400053553	Potato	cytosol	87.68	95.31
PGSC0003DMT400059830	Potato	cytosol	87.68	95.31
PGSC0003DMT400059832	Potato	cytosol	87.68	95.31
Zm00001d046449_P003	Maize	cytosol	87.47	95.3
KRH04781	Soybean	endoplasmic reticulum	87.27	95.08
KRH57863	Soybean	nucleus	87.27	95.08
PGSC0003DMT400020968	Potato	cytosol	87.27	95.08
Solyc06g009960.1.1	Tomato	cytosol	79.88	94.88
VIT_08s0040g02330.t01	Wine grape	cytosol	87.06	94.85
GSMUA_Achr10P...	Banana	cytosol	54.83	94.68
GSMUA_Achr10P...	Banana	cytosol	54.21	94.62
Zm00001d037905_P010	Maize	cytosol	87.47	94.46
HORVU4Hr1G056740.1	Barley	cytosol	86.65	94.41
TraesCS4A01G107600.1	Wheat	cytosol	86.65	94.41
TraesCS4A01G107700.1	Wheat	cytosol	86.65	94.41
TraesCS4B01G196900.1	Wheat	golgi	86.65	94.41
TraesCS5A01G415400.1	Wheat	cytosol	86.65	94.41
TraesCS5A01G415600.1	Wheat	cytosol	86.65	94.41
TraesCS5B01G418100.1	Wheat	cytosol	86.65	94.41
TraesCS5B01G418200.1	Wheat	cytosol	86.65	94.41
Zm00001d009868_P015	Maize	cytosol	87.27	94.23
Zm00001d009870_P008	Maize	cytosol	87.27	94.23
Zm00001d037873_P010	Maize	cytosol	87.27	94.23
Zm00001d037875_P014	Maize	cytosol	87.06	94.01
Zm00001d037877_P014	Maize	cytosol	87.06	94.01
CDX70032	Canola	cytosol	66.32	93.9
VIT_13s0019g03920.t01	Wine grape	cytosol	87.06	93.19
OQU75582	Sorghum	cytosol	23.82	92.8
HORVU4Hr1G056830.1	Barley	cytosol	55.03	91.47
HORVU5Hr1G100200.3	Barley	mitochondrion	86.65	90.95
GSMUA_Achr6P04090_001	Banana	cytosol	36.76	90.86
HORVU5Hr1G100700.3	Barley	plasma membrane	86.65	90.75
Zm00001d009887_P001	Maize	cytosol	26.9	89.73
GSMUA_Achr3P17840_001	Banana	cytosol	27.93	89.47
HORVU6Hr1G085320.3	Barley	cytosol	80.29	88.66
HORVU4Hr1G056820.1	Barley	plasma membrane	86.45	88.45
GSMUA_AchrUn_...	Banana	cytosol	37.58	87.56
TraesCS4B01G196800.2	Wheat	golgi	86.65	87.37
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	72.07	86.03
HORVU6Hr1G085370.1	Barley	cytosol	79.67	85.84
OQU75597	Sorghum	cytosol	30.6	85.14
VIT_06s0004g03220.t01	Wine grape	cytosol	87.89	82.63
GSMUA_Achr10P...	Banana	cytosol, plastid	35.93	81.4
VIT_19s0014g04110.t01	Wine grape	cytosol	20.12	80.99
CDY58828	Canola	cytosol	88.5	75.88
GSMUA_Achr6P02020_001	Banana	mitochondrion	50.1	70.52
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	14.78	67.92
CDY61091	Canola	cytosol	9.03	32.84
CDX96737	Canola	cytosol	31.83	29.92
CDX83874	Canola	endoplasmic reticulum	31.21	29.34
CDY19192	Canola	cytosol	31.42	28.18
CDX82758	Canola	plastid	16.02	27.46
CDY21721	Canola	cytosol	32.44	27.43
CDY22085	Canola	mitochondrion	25.46	27.25
CDX90912	Canola	mitochondrion	25.26	27.15
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	32.44	27.05
CDY21923	Canola	mitochondrion	25.26	26.97
CDY17978	Canola	mitochondrion	25.05	26.93
CDY26187	Canola	golgi, vacuole	31.42	26.15
CDX98668	Canola	plastid	14.78	25.99
CDX94002	Canola	plastid	14.78	25.44
CDY49022	Canola	plastid	17.66	25.07
CDY49485	Canola	plastid	17.45	24.85
CDX78392	Canola	cytosol	31.62	24.52
CDX70362	Canola	cytosol	32.24	24.12
CDX78988	Canola	plastid	14.78	23.84
CDY54570	Canola	plastid	14.99	23.4
CDY31442	Canola	plastid	14.78	23.08
CDY40108	Canola	cytosol	32.44	21.98
CDX85751	Canola	cytosol	31.83	21.71
CDY62618	Canola	endoplasmic reticulum, mitochondrion	14.17	18.5

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:A0A078E6Y5	EnsemblPlants:CDX95108	ProteinID:CDX95108
ProteinID:CDX95108.1	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00100644001	InterPro:G_TR_CS	InterPro:IPR000795	HAMAP:MF_00118_A	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115
PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0004EF2175	SEG:seg

Description

BnaC05g05630D

Coordinates

chrLK031886:-:1197231..1201358

Molecular Weight (calculated)

53989.7 Da

IEP (calculated)

9.516

GRAVY (calculated)

-0.280

Length

487 amino acids

Sequence
(BLAST)

001: MILHLDLLLQ PSRYTSKIYL AMGKEKFHIN IVVIGHVDSG KSTTTGHLIY KLGGIDKRVI ERFEKEAAEM NKRSFKYAWV LDKLKAERER GITIDIALWK
101: FETTKYYCTV IDAPGHRDFI KNMITGTSQA DCAVLIIDST TGGFEAGISK DGQTREHALL AFTLGVKQMI CCCNKMDATT PKYSKARYDE IIKEVSSYLK
201: KVGYNPDKIP FVPISGFEGD NMIERSTNLD WYKGPTLLEA LDQINEPKRP SDKPLRLPLQ DVYKIGGIGT VPVGRVETGM LKPGMVVTFA PSGLTTEVKS
301: VEMHHESLVE ALPGDNVGFN VKNVAVKDLK RGYVASNSKD DPAKGAANFT SQVIIMNHPG QIGNGYAPVL DCHTSHIAVK FSEILTKIDR RSGKEIEKEP
401: KFLKNGDAGM VKMTPTKPMV VETFSEYPPL GRFAVRDMRQ TVAVGVIKSV DKKDPTGAKV TKAAVKKDFI FRSEPGKVSE GLKDIFM

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.