Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0056g00050.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G07920.1 | VIT_08s0056g00050.t01 | AT3G54220.1 | 19228333 |
| AT1G07930.1 | VIT_08s0056g00050.t01 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P19000_001 | Banana | cytosol | 53.72 | 84.42 |
| OQU75582 | Sorghum | cytosol | 78.51 | 76.0 |
| Zm00001d009887_P001 | Maize | cytosol | 76.03 | 63.01 |
| CDY09214 | Canola | cytosol | 80.99 | 61.25 |
| TraesCS2D01G323300.1 | Wheat | cytosol, mitochondrion | 47.93 | 54.72 |
| OQU75597 | Sorghum | cytosol | 78.51 | 54.29 |
| HORVU5Hr1G051280.1 | Barley | cytosol | 45.45 | 52.88 |
| Zm00001d037882_P001 | Maize | cytosol | 79.34 | 51.89 |
| Bra031601.1-P | Field mustard | cytosol | 80.99 | 49.49 |
| CDY06287 | Canola | cytosol | 66.12 | 35.24 |
| CDY06289 | Canola | cytosol | 66.12 | 31.25 |
| CDY67375 | Canola | cytosol | 66.12 | 28.78 |
| Bra020251.1-P | Field mustard | cytosol | 77.69 | 22.82 |
| VIT_08s0040g02330.t01 | Wine grape | cytosol | 81.82 | 22.15 |
| KRH07098 | Soybean | cytosol, mitochondrion, nucleus | 81.82 | 22.15 |
| KRH58241 | Soybean | nucleus | 81.82 | 22.15 |
| KRH34904 | Soybean | nucleus | 81.82 | 22.1 |
| KXG20296 | Sorghum | cytosol | 80.99 | 21.92 |
| VIT_06s0004g03240.t01 | Wine grape | cytosol | 80.99 | 21.92 |
| KXG20294 | Sorghum | cytosol | 80.99 | 21.92 |
| KXG20293 | Sorghum | cytosol | 80.99 | 21.92 |
| KRH57863 | Soybean | nucleus | 80.99 | 21.92 |
| Zm00001d036904_P001 | Maize | cytosol | 80.99 | 21.92 |
| KRH04781 | Soybean | endoplasmic reticulum | 80.99 | 21.92 |
| KRG93959 | Soybean | nucleus | 80.99 | 21.92 |
| Zm00001d046449_P003 | Maize | cytosol | 80.99 | 21.92 |
| KXG20299 | Sorghum | cytosol | 80.99 | 21.92 |
| TraesCS5B01G418200.1 | Wheat | cytosol | 80.99 | 21.92 |
| Os03t0177400-01 | Rice | cytosol | 80.99 | 21.92 |
| Os03t0177500-01 | Rice | cytosol | 80.99 | 21.92 |
| Os03t0177900-01 | Rice | plasma membrane | 80.99 | 21.92 |
| Os03t0178000-02 | Rice | cytosol | 80.99 | 21.92 |
| TraesCS5B01G418100.1 | Wheat | cytosol | 80.99 | 21.92 |
| TraesCS4A01G107600.1 | Wheat | cytosol | 80.99 | 21.92 |
| TraesCS4A01G107700.1 | Wheat | cytosol | 80.99 | 21.92 |
| TraesCS4B01G196900.1 | Wheat | golgi | 80.99 | 21.92 |
| TraesCS5A01G415400.1 | Wheat | cytosol | 80.99 | 21.92 |
| TraesCS5A01G415600.1 | Wheat | cytosol | 80.99 | 21.92 |
| HORVU4Hr1G056740.1 | Barley | cytosol | 80.99 | 21.92 |
| AT5G60390.2 | Thale cress | cytosol | 80.99 | 21.83 |
| Bra031602.1-P | Field mustard | cytosol | 80.99 | 21.83 |
| Bra018669.1-P | Field mustard | cytosol | 80.99 | 21.83 |
| Bra018242.1-P | Field mustard | cytosol | 80.99 | 21.83 |
| Bra006661.1-P | Field mustard | cytosol | 80.99 | 21.83 |
| Bra002483.1-P | Field mustard | cytosol | 80.99 | 21.83 |
| AT1G07940.3 | Thale cress | cytosol | 80.99 | 21.83 |
| AT1G07930.1 | Thale cress | cytosol | 80.99 | 21.83 |
| AT1G07920.1 | Thale cress | cytosol | 80.99 | 21.83 |
| VIT_13s0019g03920.t01 | Wine grape | cytosol | 81.82 | 21.76 |
| Zm00001d037873_P010 | Maize | cytosol | 80.99 | 21.73 |
| Zm00001d037875_P014 | Maize | cytosol | 80.99 | 21.73 |
| Zm00001d009870_P008 | Maize | cytosol | 80.99 | 21.73 |
| Zm00001d009868_P015 | Maize | cytosol | 80.99 | 21.73 |
| Zm00001d037877_P014 | Maize | cytosol | 80.99 | 21.73 |
| Zm00001d037905_P010 | Maize | cytosol | 80.99 | 21.73 |
| Bra020253.1-P | Field mustard | cytosol | 80.17 | 21.6 |
| HORVU5Hr1G100200.3 | Barley | mitochondrion | 80.99 | 21.12 |
| HORVU5Hr1G100700.3 | Barley | plasma membrane | 80.99 | 21.08 |
| HORVU4Hr1G056820.1 | Barley | plasma membrane | 80.99 | 20.59 |
| TraesCS4B01G196800.2 | Wheat | golgi | 80.99 | 20.29 |
| HORVU6Hr1G085320.3 | Barley | cytosol | 73.55 | 20.18 |
| CDX95108 | Canola | cytosol, extracellular | 80.99 | 20.12 |
| CDX88757 | Canola | cytosol | 66.12 | 19.95 |
| VIT_05s0029g00030.t01 | Wine grape | cytosol | 21.49 | 19.85 |
| HORVU6Hr1G085370.1 | Barley | cytosol | 73.55 | 19.69 |
| VIT_06s0004g03220.t01 | Wine grape | cytosol | 80.99 | 18.92 |
| CDY61938 | Canola | cytosol | 66.12 | 18.69 |
| CDY34479 | Canola | cytosol | 66.12 | 18.69 |
| CDY10804 | Canola | cytosol | 66.12 | 18.69 |
| CDY09211 | Canola | cytosol | 66.12 | 18.69 |
| CDY22710 | Canola | cytosol | 64.46 | 18.27 |
| CDY22711 | Canola | cytosol | 64.46 | 18.27 |
| Bra031605.1-P | Field mustard | cytosol | 64.46 | 18.27 |
| CDX93604 | Canola | cytosol | 66.12 | 17.39 |
| Bra030707.1-P | Field mustard | cytosol | 80.99 | 16.61 |
| VIT_17s0000g09140.t01 | Wine grape | cytosol | 21.49 | 16.25 |
| CDY58828 | Canola | cytosol | 64.46 | 13.73 |
| VIT_07s0104g00600.t01 | Wine grape | mitochondrion | 29.75 | 8.02 |
| VIT_17s0000g02860.t01 | Wine grape | plastid | 33.06 | 7.71 |
| VIT_14s0066g00220.t01 | Wine grape | plastid | 28.93 | 7.19 |
| VIT_17s0000g09370.t01 | Wine grape | plastid | 28.1 | 7.0 |
| VIT_03s0017g00530.t01 | Wine grape | cytosol | 37.19 | 5.92 |
| CDX70032 | Canola | cytosol | 9.09 | 3.2 |
| VIT_12s0034g01800.t01 | Wine grape | cytosol | 4.13 | 1.36 |
| CDY67376 | Canola | cytosol | 0.0 | 0.0 |
| CDY69678 | Canola | cytosol | 0.0 | 0.0 |
| HORVU4Hr1G056830.1 | Barley | cytosol | 0.0 | 0.0 |
| CDY06290 | Canola | cytosol | 0.0 | 0.0 |
| CDY06288 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ProteinID:CBI20417 | ProteinID:CBI20417.3 | UniProt:E0CSW8 | EMBL:FN595229 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0016787 | InterPro:IPR000795 | InterPro:P-loop_NTPase | PFAM:PF00009 | PRINTS:PR00315 | PFscan:PS51722 |
| PANTHER:PTHR23115 | PANTHER:PTHR23115:SF230 | SUPFAM:SSF52540 | InterPro:TF_GTP-bd_dom | UniParc:UPI0001BE1882 | ArrayExpress:VIT_19s0014g04110 |
| EnsemblPlantsGene:VIT_19s0014g04110 | EnsemblPlants:VIT_19s0014g04110.t01 | : | : | : | : |
Description
No Description!
Coordinates
chr19:+:4374556..4374938
Molecular Weight (calculated)
13682.8 Da
IEP (calculated)
10.201
GRAVY (calculated)
-0.047
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKRKVHVNI VVIGHVDHGK LTTTGNLIYK LGGIDKRVIE LFEKKAAEMN KRSFTYAWVL DKLKAKREHG ITIDIAFWKF GTTKYYCTVI EAHGHWDFIK
101: NMVTSSSQVG CLVLIINSTT G
101: NMVTSSSQVG CLVLIINSTT G
001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
Arabidopsis Description
A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.