Factsheet for VIT_06s0004g03240.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0056g00050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	VIT_08s0056g00050.t01	AT3G54220.1	19228333
AT1G07930.1	VIT_08s0056g00050.t01	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09214	Canola	cytosol	35.12	98.12
VIT_08s0040g02330.t01	Wine grape	cytosol	97.54	97.54
GSMUA_Achr2P19000_001	Banana	cytosol	16.78	97.4
KRG93959	Soybean	nucleus	97.32	97.32
KRH58241	Soybean	nucleus	97.32	97.32
HORVU5Hr1G051280.1	Barley	cytosol	22.6	97.12
Os03t0178000-02	Rice	cytosol	96.87	96.87
Os03t0177900-01	Rice	plasma membrane	96.87	96.87
Os03t0177500-01	Rice	cytosol	96.87	96.87
Os03t0177400-01	Rice	cytosol	96.87	96.87
KRH07098	Soybean	cytosol, mitochondrion, nucleus	96.64	96.64
KRH34904	Soybean	nucleus	96.42	96.21
KXG20294	Sorghum	cytosol	96.2	96.2
KXG20293	Sorghum	cytosol	96.2	96.2
KXG20296	Sorghum	cytosol	96.2	96.2
KXG20299	Sorghum	cytosol	96.2	96.2
Zm00001d036904_P001	Maize	cytosol	96.2	96.2
Zm00001d046449_P003	Maize	cytosol	95.97	95.97
Bra031601.1-P	Field mustard	cytosol	42.51	95.96
KRH57863	Soybean	nucleus	95.75	95.75
KRH04781	Soybean	endoplasmic reticulum	95.75	95.75
CDY67375	Canola	cytosol	59.51	95.68
Zm00001d037882_P001	Maize	cytosol	39.6	95.68
VIT_13s0019g03920.t01	Wine grape	cytosol	97.32	95.6
CDY06287	Canola	cytosol	48.55	95.59
HORVU4Hr1G056740.1	Barley	cytosol	95.53	95.53
TraesCS5B01G418200.1	Wheat	cytosol	95.53	95.53
TraesCS5B01G418100.1	Wheat	cytosol	95.53	95.53
TraesCS4B01G196900.1	Wheat	golgi	95.53	95.53
Zm00001d037873_P010	Maize	cytosol	96.2	95.34
Zm00001d009870_P008	Maize	cytosol	96.2	95.34
Bra018669.1-P	Field mustard	cytosol	95.75	95.32
Bra031602.1-P	Field mustard	cytosol	95.75	95.32
Bra002483.1-P	Field mustard	cytosol	95.75	95.32
CDX88757	Canola	cytosol	85.46	95.26
Zm00001d037877_P014	Maize	cytosol	95.97	95.12
Zm00001d037875_P014	Maize	cytosol	95.97	95.12
Bra018242.1-P	Field mustard	cytosol	95.53	95.1
Bra020253.1-P	Field mustard	cytosol	95.53	95.1
CDY34479	Canola	cytosol	91.05	95.09
CDY10804	Canola	cytosol	91.05	95.09
CDY09211	Canola	cytosol	91.05	95.09
CDY61938	Canola	cytosol	91.05	95.09
CDY22710	Canola	cytosol	90.83	95.08
Bra031605.1-P	Field mustard	cytosol	90.83	95.08
CDY22711	Canola	cytosol	90.83	95.08
TraesCS4A01G107700.1	Wheat	cytosol	95.08	95.08
TraesCS4A01G107600.1	Wheat	cytosol	95.08	95.08
TraesCS5A01G415600.1	Wheat	cytosol	95.08	95.08
TraesCS5A01G415400.1	Wheat	cytosol	95.08	95.08
Zm00001d009868_P015	Maize	cytosol	95.75	94.9
Zm00001d037905_P010	Maize	cytosol	95.75	94.9
AT1G07940.3	Thale cress	cytosol	95.3	94.88
AT5G60390.2	Thale cress	cytosol	95.3	94.88
AT1G07930.1	Thale cress	cytosol	95.3	94.88
AT1G07920.1	Thale cress	cytosol	95.3	94.88
CDY06289	Canola	cytosol	54.14	94.53
Bra006661.1-P	Field mustard	cytosol	94.85	94.43
Bra020251.1-P	Field mustard	cytosol	87.02	94.42
HORVU4Hr1G056830.1	Barley	cytosol	61.3	93.52
HORVU5Hr1G100200.3	Barley	mitochondrion	95.53	92.03
OQU75582	Sorghum	cytosol	25.73	92.0
HORVU5Hr1G100700.3	Barley	plasma membrane	95.53	91.83
CDY06288	Canola	cytosol	23.27	90.43
CDY69678	Canola	cytosol	23.27	90.43
CDY67376	Canola	cytosol	23.27	90.43
CDY06290	Canola	cytosol	23.27	90.43
HORVU6Hr1G085320.3	Barley	cytosol	88.59	89.8
HORVU4Hr1G056820.1	Barley	plasma membrane	95.08	89.29
Zm00001d009887_P001	Maize	cytosol	29.08	89.04
CDX70032	Canola	cytosol	68.23	88.66
CDX93604	Canola	cytosol	91.05	88.48
TraesCS4B01G196800.2	Wheat	golgi	95.53	88.41
CDX95108	Canola	cytosol, extracellular	95.75	87.89
HORVU6Hr1G085370.1	Barley	cytosol	88.59	87.61
VIT_06s0004g03220.t01	Wine grape	cytosol	100.0	86.29
OQU75597	Sorghum	cytosol	33.33	85.14
VIT_19s0014g04110.t01	Wine grape	cytosol	21.92	80.99
Bra030707.1-P	Field mustard	cytosol	95.75	72.54
CDY58828	Canola	cytosol	90.83	71.48
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	15.66	66.04
VIT_17s0000g02860.t01	Wine grape	plastid	36.02	31.02
VIT_07s0104g00600.t01	Wine grape	mitochondrion	27.74	27.62
VIT_14s0066g00220.t01	Wine grape	plastid	29.98	27.52
VIT_05s0029g00030.t01	Wine grape	cytosol	8.05	27.48
VIT_17s0000g09140.t01	Wine grape	cytosol	9.62	26.88
VIT_17s0000g09370.t01	Wine grape	plastid	29.08	26.75
VIT_03s0017g00530.t01	Wine grape	cytosol	35.57	20.92
VIT_12s0034g01800.t01	Wine grape	cytosol	8.28	10.03

Protein Annotations

EntrezGene:100246711	wikigene:100246711	EntrezGene:100256979	wikigene:100256979	MapMan:17.5.1.1	Gene3D:2.40.30.10
Gene3D:3.40.50.300	UniProt:A5AFS1	EMBL:AM425620	ProteinID:CAN64511	ProteinID:CAN64511.1	ProteinID:CCB43650
ProteinID:CCB43650.1	InterPro:EFTu-like_2	EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	EntrezGene:LOC100246711	wikigene:LOC100246711	EntrezGene:LOC100256979
wikigene:LOC100256979	HAMAP:MF_00118_A	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447
SUPFAM:SSF50465	SUPFAM:SSF52540	TIGR:TC54425	TIGR:TC58593	TIGR:TC64300	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000151E709
ArrayExpress:VIT_06s0004g03240	EnsemblPlantsGene:VIT_06s0004g03240	EnsemblPlants:VIT_06s0004g03240.t01	unigene:Vvi.1750	unigene:Vvi.23325	unigene:Vvi.23334
RefSeq:XP_002284924	RefSeq:XP_002284924.1	RefSeq:XP_002284964	RefSeq:XP_002284964.1	RefSeq:XP_003632208	RefSeq:XP_003632208.1
RefSeq:XP_010651131.1	:	:	:	:	:

Description

Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:A5AFS1]

Coordinates

chr6:+:4011874..4014828

Molecular Weight (calculated)

49339.9 Da

IEP (calculated)

9.582

GRAVY (calculated)

-0.321

Length

447 amino acids

Sequence
(BLAST)

001: MGKEKVHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTRYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI VKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DMINEPKRPT DKPLRLPLQD VYKIGGIGTV PVGRVETGVL KPGMVVTFGP SGLTTEVKSV EMHHESLPEA LPGDNVGFNV
301: KNVAVKDLKR GFVASNSKDD PAKEAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF AEILTKIDRR SGKELEKEPK FLKNGDAGFV KMIPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVE KKDPSGAKVT KSAAKKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.