Factsheet for Bra006661.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	Bra007056.1-P	AT3G54220.1	19228333
AT1G07930.1	Bra007056.1-P	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P24440_001	Banana	cytosol	28.06	99.21
Bra031602.1-P	Field mustard	cytosol	98.89	98.89
Bra018669.1-P	Field mustard	cytosol	98.89	98.89
Bra002483.1-P	Field mustard	cytosol	98.89	98.89
Bra018242.1-P	Field mustard	cytosol	98.66	98.66
Bra020253.1-P	Field mustard	cytosol	98.66	98.66
Bra031605.1-P	Field mustard	cytosol	93.76	98.59
CDY67375	Canola	cytosol	61.02	98.56
Bra020251.1-P	Field mustard	cytosol	90.42	98.54
AT1G07920.1	Thale cress	cytosol	98.22	98.22
AT5G60390.2	Thale cress	cytosol	98.22	98.22
AT1G07940.3	Thale cress	cytosol	98.22	98.22
AT1G07930.1	Thale cress	cytosol	98.22	98.22
HORVU5Hr1G051280.1	Barley	cytosol	22.72	98.08
Bra031601.1-P	Field mustard	cytosol	42.98	97.47
GSMUA_Achr2P19000_001	Banana	cytosol	16.48	96.1
KRH58241	Soybean	nucleus	95.32	95.75
KRG93959	Soybean	nucleus	95.32	95.75
Zm00001d037882_P001	Maize	cytosol	39.42	95.68
CDY67376	Canola	cytosol	24.5	95.65
Os03t0178000-02	Rice	cytosol	94.88	95.3
Os03t0177900-01	Rice	plasma membrane	94.88	95.3
Os03t0177500-01	Rice	cytosol	94.88	95.3
Os03t0177400-01	Rice	cytosol	94.88	95.3
Solyc06g005060.2.1	Tomato	cytosol	94.88	95.09
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	94.88	95.09
KRH07098	Soybean	cytosol, mitochondrion, nucleus	94.65	95.08
KRH34904	Soybean	nucleus	94.65	94.87
Zm00001d036904_P001	Maize	cytosol	94.43	94.85
KXG20293	Sorghum	cytosol	94.43	94.85
KXG20294	Sorghum	cytosol	94.43	94.85
KXG20296	Sorghum	cytosol	94.43	94.85
KXG20299	Sorghum	cytosol	94.43	94.85
VIT_06s0004g03240.t01	Wine grape	cytosol	94.43	94.85
PGSC0003DMT400050663	Potato	cytosol	94.43	94.85
Solyc11g069700.1.1	Tomato	nucleus	94.21	94.63
PGSC0003DMT400059832	Potato	cytosol	94.21	94.42
PGSC0003DMT400053547	Potato	cytosol	94.21	94.42
PGSC0003DMT400053553	Potato	cytosol	94.21	94.42
PGSC0003DMT400059830	Potato	cytosol	94.21	94.42
Zm00001d046449_P003	Maize	cytosol	93.99	94.41
KRH04781	Soybean	endoplasmic reticulum	93.76	94.18
KRH57863	Soybean	nucleus	93.76	94.18
PGSC0003DMT400020968	Potato	cytosol	93.76	94.18
GSMUA_Achr10P...	Banana	cytosol	59.02	93.97
VIT_08s0040g02330.t01	Wine grape	cytosol	93.54	93.96
GSMUA_Achr10P...	Banana	cytosol	58.35	93.91
Solyc06g009960.1.1	Tomato	cytosol	85.52	93.66
Zm00001d037905_P010	Maize	cytosol	93.99	93.57
TraesCS4B01G196900.1	Wheat	golgi	93.1	93.51
HORVU4Hr1G056740.1	Barley	cytosol	93.1	93.51
TraesCS5B01G418200.1	Wheat	cytosol	93.1	93.51
TraesCS5B01G418100.1	Wheat	cytosol	93.1	93.51
Zm00001d009870_P008	Maize	cytosol	93.76	93.35
Zm00001d009868_P015	Maize	cytosol	93.76	93.35
Zm00001d037873_P010	Maize	cytosol	93.76	93.35
TraesCS5A01G415600.1	Wheat	cytosol	92.87	93.29
TraesCS5A01G415400.1	Wheat	cytosol	92.87	93.29
TraesCS4A01G107600.1	Wheat	cytosol	92.87	93.29
TraesCS4A01G107700.1	Wheat	cytosol	92.87	93.29
Zm00001d037875_P014	Maize	cytosol	93.54	93.13
Zm00001d037877_P014	Maize	cytosol	93.54	93.13
OQU75582	Sorghum	cytosol	25.84	92.8
VIT_13s0019g03920.t01	Wine grape	cytosol	93.54	92.31
GSMUA_Achr6P04090_001	Banana	cytosol	39.87	90.86
HORVU4Hr1G056830.1	Barley	cytosol	58.8	90.1
HORVU5Hr1G100200.3	Barley	mitochondrion	93.1	90.09
HORVU5Hr1G100700.3	Barley	plasma membrane	93.1	89.89
Zm00001d009887_P001	Maize	cytosol	29.18	89.73
GSMUA_Achr3P17840_001	Banana	cytosol	30.29	89.47
HORVU6Hr1G085320.3	Barley	cytosol	86.41	87.98
GSMUA_AchrUn_...	Banana	cytosol	40.76	87.56
HORVU4Hr1G056820.1	Barley	plasma membrane	92.65	87.39
TraesCS4B01G196800.2	Wheat	golgi	93.1	86.54
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	77.95	85.78
HORVU6Hr1G085370.1	Barley	cytosol	85.75	85.18
OQU75597	Sorghum	cytosol	33.18	85.14
VIT_06s0004g03220.t01	Wine grape	cytosol	94.43	81.85
VIT_19s0014g04110.t01	Wine grape	cytosol	21.83	80.99
GSMUA_Achr10P...	Banana	cytosol, plastid	38.75	80.93
Bra030707.1-P	Field mustard	cytosol	98.44	74.92
GSMUA_Achr6P02020_001	Banana	mitochondrion	53.67	69.65
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	15.81	66.98
Bra013458.1-P	Field mustard	plastid	28.95	27.66
Bra038805.1-P	Field mustard	plastid	29.18	27.58
Bra036234.1-P	Field mustard	mitochondrion	27.84	27.53
Bra033753.1-P	Field mustard	plastid	28.73	27.22
Bra000853.1-P	Field mustard	mitochondrion	27.39	27.15
Bra020926.1-P	Field mustard	plastid	25.17	26.46
Bra006069.1-P	Field mustard	cytosol	35.19	25.08
Bra016571.1-P	Field mustard	cytosol	35.41	22.43
Bra028577.1-P	Field mustard	cytosol	34.97	21.51

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra006661	EnsemblPlants:Bra006661.1	EnsemblPlants:Bra006661.1-P
InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS
InterPro:IPR000795	UniProt:M4CR20	HAMAP:MF_00118_A	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143
PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230
SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI00025401AE	SEG:seg	:

Description

AT5G60390 (E=1e-251) | elongation factor 1-alpha / EF-1-alpha

Coordinates

chrA03:-:4509393..4510826

Molecular Weight (calculated)

49382.0 Da

IEP (calculated)

9.548

GRAVY (calculated)

-0.314

Length

449 amino acids

Sequence
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGML KPGMVVTFAP SGLTTEVKSV EMHHESLVEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIILNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDGR SGKEMEKEPK YLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKCPTGAKVT KAAVKKGAK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.