Factsheet for Bra020926.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	39.58	92.35
CDY54570	Canola	plastid	67.21	91.99
Bra013458.1-P	Field mustard	plastid	93.21	84.68
Bra038805.1-P	Field mustard	plastid	93.91	84.42
AT4G20360.1	Thale cress	plastid	93.21	83.61
Bra033753.1-P	Field mustard	plastid	89.93	81.01
VIT_17s0000g09370.t01	Wine grape	plastid	83.84	73.66
KRH57147	Soybean	plastid	82.2	73.28
Solyc03g112150.1.1	Tomato	plastid	81.03	72.54
Solyc06g071790.2.1	Tomato	nucleus, plastid	76.11	72.22
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	80.56	72.12
PGSC0003DMT400092196	Potato	plastid	80.33	71.91
KRH03857	Soybean	plastid	72.37	69.13
TraesCS6B01G238600.1	Wheat	plastid	75.64	69.02
Zm00001d017092_P001	Maize	plastid	74.71	68.6
TraesCS6D01G193000.1	Wheat	nucleus, plastid	75.41	68.51
TraesCS6A01G209800.1	Wheat	plastid	75.41	68.51
EES05366	Sorghum	plastid	74.71	68.45
Zm00001d050969_P001	Maize	plastid	74.71	68.45
Os02t0595700-01	Rice	plastid	74.71	68.31
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	46.6	63.58
HORVU6Hr1G053680.5	Barley	plastid	70.02	58.17
Bra036234.1-P	Field mustard	mitochondrion	57.85	54.41
Bra000853.1-P	Field mustard	mitochondrion	57.61	54.3
Bra006661.1-P	Field mustard	cytosol	26.46	25.17
Bra020253.1-P	Field mustard	cytosol	26.23	24.94
Bra002483.1-P	Field mustard	cytosol	26.23	24.94
Bra018669.1-P	Field mustard	cytosol	26.23	24.94
Bra031602.1-P	Field mustard	cytosol	26.23	24.94
Bra018242.1-P	Field mustard	cytosol	26.0	24.72
Bra031605.1-P	Field mustard	cytosol	24.36	24.36
Bra020251.1-P	Field mustard	cytosol	23.18	24.03
Bra031601.1-P	Field mustard	cytosol	10.07	21.72
Bra030707.1-P	Field mustard	cytosol	26.23	18.98
Bra006069.1-P	Field mustard	cytosol	26.7	18.1
Bra028577.1-P	Field mustard	cytosol	26.46	15.48
Bra016571.1-P	Field mustard	cytosol	23.42	14.1

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra020926	EnsemblPlants:Bra020926.1	EnsemblPlants:Bra020926.1-P
ncoils:Coil	InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
InterPro:G_TR_CS	InterPro:IPR000795	UniProt:M4DWN2	HAMAP:MF_00118_B	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43721
PANTHER:PTHR43721:SF13	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00485
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI0002545A10	SEG:seg

Description

AT4G20360 (E=1e-185) ATRAB8D, ATRABE1B | ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B); GTP binding / GTPase/ translation elongation factor

Coordinates

chrA08:+:11163488..11164906

Molecular Weight (calculated)

46721.2 Da

IEP (calculated)

4.950

GRAVY (calculated)

-0.119

Length

427 amino acids

Sequence
(BLAST)

001: MAISSPAACS SRLITSYSTP SLPLSPAAIS TSTKLKTLNL SSFLPPHSLT TLPQSTRRSF TVRAAHEIDA APEERARGIT INTATVEYET ENRHYAHVDC
101: PGHADYVKNM ITGAAQMDGP ILVVSGADGP MPQTKEHILL AKQVGVPDMV VFLNKEDQVD DSELLELVEL EVRELLSSYE FNGDDIPIIS GSALLAVETL
201: TENPNVKRGD NKWVDKIYEL MDAVDSYIPI PQRQTELPFL LAVEDVFSIT GRGTVATGRV ERGTVKVGET VDLVGLRETR NYTVTGVEMF QKILDEALAG
301: DNVGLLLRGI QKADIQRGMV LAKPGSITLH TKFEAIVYVL EKEEGGRHSP FFAGYRPQFY MRTTDVTGKV TKIMNDKDEE SKMVMPGDRV KIVVELIVPV
401: ACEQGMRFAI REGGKTVGAG VIQSIIE

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.