CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57147	Soybean	plastid	89.71	83.72
CDX82758	Canola	plastid	52.57	82.75
CDX98668	Canola	plastid	48.99	79.06
CDX78988	Canola	plastid	52.8	78.15
CDY54570	Canola	plastid	54.14	77.56
CDY49485	Canola	plastid	59.28	77.49
CDX94002	Canola	plastid	48.99	77.39
CDY49022	Canola	plastid	59.28	77.26
KRH63638	Soybean	endoplasmic reticulum, nucleus, plastid	82.77	77.08
KRH54307	Soybean	mitochondrion, plastid	82.33	76.83
CDY31442	Canola	plastid	53.47	76.6
Bra013458.1-P	Field mustard	plastid	79.42	75.53
Solyc06g071790.2.1	Tomato	nucleus, plastid	75.84	75.33
Bra038805.1-P	Field mustard	plastid	79.42	74.74
Solyc03g112150.1.1	Tomato	plastid	79.19	74.21
Bra033753.1-P	Field mustard	plastid	78.3	73.84
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	78.75	73.79
AT4G20360.1	Thale cress	plastid	78.08	73.32
PGSC0003DMT400092196	Potato	plastid	78.08	73.17
Bra020926.1-P	Field mustard	plastid	69.13	72.37
KRH33293	Soybean	plastid	32.66	62.13
KRG95471	Soybean	nucleus	52.8	52.21
KRH67153	Soybean	nucleus	52.57	51.76
KRH20931	Soybean	mitochondrion	51.68	51.33
KRH11356	Soybean	mitochondrion	42.28	45.76
KRG93959	Soybean	nucleus	25.95	25.95
KRH58241	Soybean	nucleus	25.95	25.95
KRH57863	Soybean	nucleus	25.73	25.73
KRH07098	Soybean	cytosol, mitochondrion, nucleus	25.73	25.73
KRH04781	Soybean	endoplasmic reticulum	25.5	25.5
KRH34904	Soybean	nucleus	25.5	25.45
KRH60492	Soybean	cytosol	23.71	20.99
KRH41785	Soybean	cytosol, nucleus	23.49	20.83
KRH42938	Soybean	cytosol	27.52	15.63
KRH59057	Soybean	cytosol	27.29	15.38

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:A0A0R0FCD2	EMBL:ACUP02010364	InterPro:EFTU_2
InterPro:EFTu-like_2	EnsemblPlantsGene:GLYMA_17G124500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS	InterPro:IPR000795	EnsemblPlants:KRH03857
ProteinID:KRH03857	ProteinID:KRH03857.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43721	PANTHER:PTHR43721:SF6	SUPFAM:SSF50447
SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0006EDA7C2	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:-:9934715..9937848

Molecular Weight (calculated)

48743.9 Da

IEP (calculated)

9.408

GRAVY (calculated)

-0.195

Length

447 amino acids

Sequence
(BLAST)

001: MAISSAAAST SKLSYPQHIH HSSPSPSSNC LFLKTHTPST THLSSSFIHP STILPLPPAA ATTLRRSFTV RAARGKFERK KPHVNIGTIG HVDHGKTTLT
101: AALTMALASL GNSAPKKYDE IDAAPEERAR GITINTATVE YETENRHYAH VDCPGHADYV KNMITGAAQM DGAILVVSGA DGPMPQTKEH ILLAKQVGVP
201: NIVVFLNKQD QFPGGRCSDY LRFRFACFGR LLMANPAIKR GENQWVDKIY ELMDAVDNYI PIPQRCFTIT GRGTVATGRV ERGTIRVGET VDIVGVKETR
301: NTTVTGVEMF QKILDEALAG DNVGLLLRGI QKTDIQRGMV LAKPGTITPH TKFSAIVYVL KKEEGGRHSP FFAGYRPQFY MRTTDVTGKV TAITNDRDEE
401: SQMVMPGDRV KMVVELIVPV ACEQGMRFAI REGGKTVGAG VIQSIIE

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.