CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
mitochondrion 6

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95471	Soybean	nucleus	98.02	98.45
VIT_07s0104g00600.t01	Wine grape	mitochondrion	85.9	86.86
PGSC0003DMT400009804	Potato	mitochondrion	85.68	86.44
Solyc09g073000.2.1	Tomato	plastid	85.68	86.44
AT4G02930.1	Thale cress	mitochondrion	85.46	85.46
PGSC0003DMT400037909	Potato	plastid	84.14	84.7
Solyc06g008940.2.1	Tomato	unclear	84.14	84.7
Bra036234.1-P	Field mustard	mitochondrion	84.36	84.36
CDX90912	Canola	mitochondrion	83.92	84.11
HORVU5Hr1G122350.1	Barley	cytosol	56.83	84.04
CDY22085	Canola	mitochondrion	84.14	83.96
Bra000853.1-P	Field mustard	mitochondrion	83.7	83.89
CDY17978	Canola	mitochondrion	83.7	83.89
CDY21923	Canola	mitochondrion	83.92	83.55
GSMUA_Achr8P06040_001	Banana	mitochondrion	83.26	83.08
GSMUA_Achr3P24830_001	Banana	mitochondrion	83.26	83.08
Zm00001d034856_P003	Maize	mitochondrion	81.72	82.08
Os03t0851100-01	Rice	mitochondrion	81.5	81.68
EER90508	Sorghum	mitochondrion	81.28	81.46
KRH20931	Soybean	mitochondrion	80.62	81.33
TraesCS4A01G330400.1	Wheat	mitochondrion	77.75	78.1
TraesCS5D01G542300.1	Wheat	mitochondrion	77.31	77.83
TraesCS5B01G545200.1	Wheat	mitochondrion	77.31	77.65
Zm00001d012846_P005	Maize	mitochondrion	77.53	77.53
KRH11356	Soybean	mitochondrion	70.04	77.0
Zm00001d040673_P001	Maize	mitochondrion	18.94	75.44
TraesCS1B01G431000.1	Wheat	cytosol	65.86	74.75
TraesCS5B01G545300.2	Wheat	cytosol	62.78	71.61
CDY62618	Canola	endoplasmic reticulum, mitochondrion	47.58	57.91
KRH57147	Soybean	plastid	59.25	56.16
KRH54307	Soybean	mitochondrion, plastid	59.25	56.16
KRH63638	Soybean	endoplasmic reticulum, nucleus, plastid	59.25	56.04
KRH03857	Soybean	plastid	51.76	52.57
KRH33293	Soybean	plastid	26.65	51.49
KRH57863	Soybean	nucleus	27.53	27.96
KRH07098	Soybean	cytosol, mitochondrion, nucleus	27.53	27.96
KRH04781	Soybean	endoplasmic reticulum	27.53	27.96
KRG93959	Soybean	nucleus	27.53	27.96
KRH58241	Soybean	nucleus	27.53	27.96
KRH34904	Soybean	nucleus	27.31	27.68
KRH41785	Soybean	cytosol, nucleus	25.77	23.21
KRH60492	Soybean	cytosol	25.77	23.17
KRH42938	Soybean	cytosol	28.19	16.26
KRH59057	Soybean	cytosol	27.75	15.89

Protein Annotations

EntrezGene:100791600	MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EMBL:ACUP02002037	ncoils:Coil
InterPro:EFTU_2	InterPro:EFTu-like_2	EnsemblPlantsGene:GLYMA_03G150600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
InterPro:G_TR_CS	UniProt:I1JNR3	InterPro:IPR000795	EnsemblPlants:KRH67153	ProteinID:KRH67153	ProteinID:KRH67153.1
HAMAP:MF_00118_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43721	PANTHER:PTHR43721:SF12	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI00023C1DEE	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:36566737..36570958

Molecular Weight (calculated)

49318.4 Da

IEP (calculated)

6.865

GRAVY (calculated)

-0.166

Length

454 amino acids

Sequence
(BLAST)

001: MATIVLRNCS STSRRLFPLT SQIHSSFTRS PLSPPVFTND STSSSSSSSS SSNPWWRSMA TFTRTKPHVN VGTIGHVDHG KTTLTAAITR VLADEGKAKA
101: VAFDEIDKAP EEKKRGITIA TAHVEYETAK RHYAHVDCPG HADYVKNMIT GAAQMDGGIL VVSAPDGPMP QTKEHILLAR QVGVPSLVCF LNKVDAVDDP
201: ELLELVEMEL RELLSFYKFP GDEIPIIRGS ALSALQGTND EIGRQAILKL MDAVDEYIPD PVRQLDKPFL MPIEDVFSIQ GRGTVATGRV EQGIIKVGDE
301: VEVLGLMQGG PLKTTVTGVE MFKKILDQGQ AGDNVGLLLR GLKREDIQRG QVIAKPGSVK TSKKFEAEIY VLTKDEGGRH TAFFSNYKPQ FYLRTADVTG
401: KVELPENVKM VMPGDNVTAV FELISAVPLE AGQRFALREG GRTVGAGVVS KVLS

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.