Factsheet for Zm00001d034856_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 14690504
extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 14690504

F Hochholdinger, L Guo, PS Schnable

Department of Agronomy, Iowa State University, Ames, IA 50011, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90508	Sorghum	mitochondrion	96.46	96.25
Os03t0851100-01	Rice	mitochondrion	92.04	91.83
Zm00001d040673_P001	Maize	mitochondrion	22.12	87.72
Zm00001d012846_P005	Maize	mitochondrion	87.83	87.44
HORVU5Hr1G122350.1	Barley	cytosol	58.63	86.32
TraesCS4A01G330400.1	Wheat	mitochondrion	86.06	86.06
TraesCS5B01G545200.1	Wheat	mitochondrion	85.84	85.84
TraesCS5D01G542300.1	Wheat	mitochondrion	84.96	85.14
GSMUA_Achr8P06040_001	Banana	mitochondrion	85.4	84.84
KRG95471	Soybean	nucleus	82.74	82.74
Solyc09g073000.2.1	Tomato	plastid	81.42	81.78
VIT_07s0104g00600.t01	Wine grape	mitochondrion	81.19	81.74
KRH67153	Soybean	nucleus	82.08	81.72
PGSC0003DMT400009804	Potato	mitochondrion	81.19	81.56
Solyc06g008940.2.1	Tomato	unclear	80.75	80.93
PGSC0003DMT400037909	Potato	plastid	80.53	80.71
KRH20931	Soybean	mitochondrion	79.2	79.56
CDY22085	Canola	mitochondrion	79.87	79.34
Bra036234.1-P	Field mustard	mitochondrion	79.65	79.3
AT4G02930.1	Thale cress	mitochondrion	79.65	79.3
CDX90912	Canola	mitochondrion	79.42	79.25
Bra000853.1-P	Field mustard	mitochondrion	79.2	79.03
CDY17978	Canola	mitochondrion	79.2	79.03
CDY21923	Canola	mitochondrion	79.42	78.73
TraesCS1B01G431000.1	Wheat	cytosol	68.14	77.0
KRH11356	Soybean	mitochondrion	68.36	74.82
TraesCS5B01G545300.2	Wheat	cytosol	65.27	74.12
VIT_17s0000g09140.t01	Wine grape	cytosol	23.45	66.25
VIT_05s0029g00030.t01	Wine grape	cytosol	18.36	63.36
Zm00001d017092_P001	Maize	plastid	58.19	56.56
Zm00001d050969_P001	Maize	plastid	57.96	56.22
CDY62618	Canola	endoplasmic reticulum, mitochondrion	44.91	54.42
Zm00001d009887_P001	Maize	cytosol	10.4	32.19
Zm00001d037882_P001	Maize	cytosol	13.05	31.89
VIT_12s0034g01800.t01	Wine grape	cytosol	25.22	30.89
Zm00001d036904_P001	Maize	cytosol	27.88	28.19
Zm00001d046449_P003	Maize	cytosol	27.88	28.19
Zm00001d037875_P014	Maize	cytosol	28.1	28.16
Zm00001d037877_P014	Maize	cytosol	28.1	28.16
Zm00001d021788_P001	Maize	cytosol, extracellular, plasma membrane, plastid	27.65	27.96
Zm00001d006596_P001	Maize	cytosol	27.65	27.96
Zm00001d037873_P010	Maize	cytosol	27.88	27.94
Zm00001d037905_P010	Maize	cytosol	27.88	27.94
Zm00001d009870_P008	Maize	cytosol	27.88	27.94
Zm00001d009868_P015	Maize	cytosol	27.88	27.94
Zm00001d004172_P005	Maize	cytosol	24.56	20.52
Zm00001d025100_P005	Maize	cytosol	22.35	18.0
Zm00001d001827_P005	Maize	cytosol	26.99	17.55
Zm00001d026213_P001	Maize	cytosol	27.88	15.18

Protein Annotations

EntrezGene:100273405	MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:B4FVB2	EMBL:BT041050
EMBL:BT086510	InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
InterPro:G_TR_CS	InterPro:IPR000795	HAMAP:MF_00118_B	ProteinID:ONM11616.1	ProteinID:ONM11617.1	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR43721	PANTHER:PTHR43721:SF12	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C
InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI00017B761F	EnsemblPlantsGene:Zm00001d034856	EnsemblPlants:Zm00001d034856_P003	EnsemblPlants:Zm00001d034856_T003	SEG:seg

Description

elongation factor TU mitochondrial1 elongation factor TU mitochondrial1

Coordinates

chr1:-:303903433..303908535

Molecular Weight (calculated)

48486.6 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.073

Length

452 amino acids

Sequence
(BLAST)

001: MASAAVLRNA GSRRLFSYPT LRAAAIYVPS ALPDAPAAAA APAQPPPTAG TLWARSMATF TRTKPHVNVG TIGHVDHGKT TLTAAITKVL AEAGKAKAVA
101: FDEIDKAPEE KARGITIATA HVEYETAKRH YAHVDCPGHA DYVKNMITGA AQMDGGILVV SAPDGPMPQT KEHILLARQV GVPSLVCFLN KVDAVDDPEL
201: LELVEMELRE LLSFYKFPGD EIPIIRGSAL SALQGNNDEI GKNAILKLMD AVDEYIPDPV RQLDKPFLMP IEDVFSIQGR GTVVTGRVEQ GTIKTGEDVE
301: ILGLAQTGPL KTTVTGVEMF KKILDHGEAG DNVGLLLRGL KRGDVERGQV VCKPGSLKTC KKFEAEIYVL TKDEGGRHTA FVTNYSPQFY FRTADVTGRV
401: ELLGEMKMVL PGDNVTANFE LISPVPLEPG QRFAIREGGR TVGAGVVSKV LS

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.