Factsheet for Zm00001d001827_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13106	Sorghum	cytosol	85.18	84.33
Os04t0677800-02	Rice	cytosol	67.34	68.62
TraesCS2A01G592500.1	Wheat	cytosol	67.34	68.32
TraesCS2B01G591700.6	Wheat	cytosol	67.77	66.15
HORVU2Hr1G119310.19	Barley	cytosol	64.32	64.88
TraesCS2D01G562000.1	Wheat	cytosol	68.49	58.4
GSMUA_Achr4P05390_001	Banana	cytosol	51.08	52.21
Solyc03g119290.2.1	Tomato	cytosol	43.88	51.87
CDY61091	Canola	cytosol	9.93	51.49
Solyc12g036410.1.1	Tomato	cytosol	41.58	49.15
CDX85751	Canola	cytosol	48.78	47.48
CDY40108	Canola	cytosol	48.63	47.01
CDX78392	Canola	cytosol	42.45	46.97
Bra006069.1-P	Field mustard	cytosol	42.45	46.83
VIT_03s0017g00530.t01	Wine grape	cytosol	51.08	46.71
Bra028577.1-P	Field mustard	cytosol	48.78	46.44
CDX70362	Canola	cytosol	43.31	46.24
AT5G10630.4	Thale cress	cytosol	48.49	45.36
KRH59057	Soybean	cytosol	50.94	44.64
KRH42938	Soybean	cytosol	50.36	44.47
Zm00001d037882_P001	Maize	cytosol	11.51	43.24
Zm00001d009887_P001	Maize	cytosol	8.49	40.41
Zm00001d026213_P001	Maize	cytosol	45.47	38.07
Zm00001d021788_P001	Maize	cytosol, extracellular, plasma membrane, plastid	22.16	34.45
Zm00001d006596_P001	Maize	cytosol	22.01	34.23
Zm00001d036904_P001	Maize	cytosol	22.01	34.23
Zm00001d046449_P003	Maize	cytosol	21.87	34.0
Zm00001d009868_P015	Maize	cytosol	22.01	33.92
Zm00001d009870_P008	Maize	cytosol	21.87	33.7
Zm00001d037877_P014	Maize	cytosol	21.87	33.7
Zm00001d037873_P010	Maize	cytosol	21.87	33.7
Zm00001d037875_P014	Maize	cytosol	21.87	33.7
Zm00001d037905_P010	Maize	cytosol	21.73	33.48
Zm00001d004172_P005	Maize	cytosol	23.17	29.76
Zm00001d025100_P005	Maize	cytosol	21.87	27.09
Zm00001d034856_P003	Maize	mitochondrion	17.55	26.99
Zm00001d050969_P001	Maize	plastid	16.55	24.68
Zm00001d017092_P001	Maize	plastid	16.4	24.52
Zm00001d012846_P005	Maize	mitochondrion	15.97	24.45
Zm00001d040673_P001	Maize	mitochondrion	3.45	21.05

Protein Annotations

EntrezGene:103645758	MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:A0A1D6DT68
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003746
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0006412	GO:GO:0006413
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	InterPro:IPR000795	InterPro:IPR001876	ProteinID:ONM12087.1
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PRINTS:PR00315	ScanProsite:PS01358	PFscan:PS51722
PANTHER:PTHR23115	PANTHER:PTHR23115:SF219	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	SUPFAM:SSF90209
InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0008459F3A	EnsemblPlantsGene:Zm00001d001827
EnsemblPlants:Zm00001d001827_P005	EnsemblPlants:Zm00001d001827_T005	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:

Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein

Coordinates

chr2:+:1539663..1545379

Molecular Weight (calculated)

76519.8 Da

IEP (calculated)

8.342

GRAVY (calculated)

-0.204

Length

695 amino acids

Sequence
(BLAST)

001: MFVPVLDNMS DFEEPFKISG MWQCSICTHE NTTYSSSCEL CGVLHDLSLY FNDISEDEDG AKCRHKYSGV SILARSLFTP PSAKSKAIVF SHDFKDRRNT
101: TGNKQATMDA LHKTFMTRKK RHINIVPFKF DTPSPDDMVT TGLKSSRNFR KVDTEVLVKD SVGVTGKEMM NNDILLTEKN TSMDPSALVQ LDDGGTSSNV
201: PSSSQNITLA LDHELQHLSL ESKLKNSKTN VKKTASVSHY KPEPWMLQSE NQEIRNQLSL AIVGHVDSGK STLCGRLRHA LGLISKKQMH KYEKEAKEKG
301: KGSFAYAWAM DESSDERERG ITMTVAVAYF NSEKYRVVLL DSPGHKDFVP NMISGATQAD AAILVVDASI GSFEAGMGVN GIGQTKEHSQ LVRSFGVENL
401: IVAVNKMDGV EYSKERFQSV KSQLGVFLRS CGYKDSSVTW VPLSAMANEN LVTACSDTRL LSWYNGGCLL QAIDSLPPPR RDVSSPLRLP ICDVIASHTL
501: GQVAVCGKVE SGGIRTGCKV LVMPSGDIAT VKTMERDSST CSLARAGDNV AVGLHGVDPG HIAAGGVLCH PDFPWETARR IALFLFVWCD LLYLFVSMRN
601: HYFQFELHIR HAKSSARLVR ILSSLDQKTG RALKKAPRLL TARQAALVEV RLDREACVEE FSTLKALARV FLRSQGSTVA VGVVTRVLDR ALDMG

Best Arabidopsis Sequence Match ( AT5G10630.1 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEAAAE PKEEIAKTQG LWRCAICTYD NVETMFVCDI CGVLRHPVAG NQSINKNTAP FKFDAPSPDD
101: LVSNGLTSSK TGPKGSGDAS MRQKEKQDSV EQKPLKKGGD SSETSSRGRH DKLDDKGGAG GIKSGKSLPK AKADMSNETS SSSKYMETSE SLTGTMNKMS
201: LIGETENSSD IKIRGPKSQS KHKPEEWMLL DKESDALSQL NLAIVGHVDS GKSTLSGRLL HLLGRISQKQ MHKYEKEAKL QGKGSFAYAW ALDESAEERE
301: RGITMTVAVA YFNSKRHHVV LLDSPGHKDF VPNMIAGATQ ADAAILVIDA SVGAFEAGFD NLKGQTREHA RVLRGFGVEQ VIVAINKMDI VGYSKERFDL
401: IKQHVGSFLQ SCRFKDSSLT WIPLSAMENQ NLVAAPSDNR LSSWYQGPCL LDAVDSVKSP DRDVSKPLLM PICDAVRSTS QGQVSACGKL EAGAVRPGSK
501: VMVMPSGDQG TIRSLERDSQ ACTIARAGDN VALALQGIDA NQVMAGDVLC HPDFPVSVAT HLELMVLVLE GATPILLGSQ LEFHVHHAKE AATVVKLVAM
601: LDPKTGQPTK KSPRCLTAKQ SAMLEVSLQN PVCVETFSES RALGRVFLRS SGRTVAMGKV TRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.