Factsheet for Solyc12g036410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g119290.2.1	Tomato	cytosol	71.6	71.6
GSMUA_Achr1P00050_001	Banana	cytosol	52.55	70.23
CDY61091	Canola	cytosol	12.59	55.22
CDX78392	Canola	cytosol	58.16	54.46
Bra006069.1-P	Field mustard	cytosol	58.16	54.29
CDX70362	Canola	cytosol	57.14	51.61
Os01t0116600-01	Rice	cytosol	53.91	48.4
Os04t0596500-02	Rice	cytosol	53.74	48.17
VIT_03s0017g00530.t01	Wine grape	cytosol	62.24	48.16
GSMUA_Achr4P05390_001	Banana	cytosol	55.61	48.09
EES12776	Sorghum	cytosol	55.44	48.08
TraesCS2D01G443300.1	Wheat	cytosol	54.93	47.5
CDX85751	Canola	cytosol	57.65	47.48
TraesCS2A01G444100.1	Wheat	cytosol	54.76	47.28
TraesCS2B01G465300.1	Wheat	cytosol	54.76	47.28
CDY40108	Canola	cytosol	57.31	46.87
AT5G10630.4	Thale cress	cytosol	59.18	46.84
Bra028577.1-P	Field mustard	cytosol	57.14	46.03
KRH42938	Soybean	cytosol	61.39	45.87
KRH59057	Soybean	cytosol	61.05	45.27
Os04t0677800-02	Rice	cytosol	51.36	44.28
EES13106	Sorghum	cytosol	52.04	43.59
TraesCS2A01G592500.1	Wheat	cytosol	50.51	43.36
Solyc03g118990.1.1	Tomato	cytosol	5.1	42.86
HORVU2Hr1G102800.6	Barley	cytosol, plastid	54.59	42.52
Zm00001d001827_P005	Maize	cytosol	49.15	41.58
TraesCS2B01G591700.6	Wheat	cytosol	49.83	41.15
HORVU2Hr1G119310.19	Barley	cytosol	47.79	40.78
Zm00001d026213_P001	Maize	cytosol	55.1	39.04
TraesCS2D01G562000.1	Wheat	cytosol	49.83	35.95
Solyc11g069700.1.1	Tomato	nucleus	26.02	34.23
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	25.51	33.48
Solyc06g005060.2.1	Tomato	cytosol	25.51	33.48
Solyc06g009960.1.1	Tomato	cytosol	23.13	33.17
Solyc06g069020.2.1	Tomato	cytosol, nucleus	28.23	31.09
Solyc09g073000.2.1	Tomato	plastid	19.56	25.56
Solyc06g071790.2.1	Tomato	nucleus, plastid	18.54	24.22
Solyc06g008940.2.1	Tomato	unclear	18.37	23.95
Solyc03g112150.1.1	Tomato	plastid	19.05	23.48

Protein Annotations

MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	InterPro:IPR000795	InterPro:IPR001876	UniProt:K4DE98
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS01358
PFscan:PS50199	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF219	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	SUPFAM:SSF90209	EnsemblPlantsGene:Solyc12g036410.1	EnsemblPlants:Solyc12g036410.1.1	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000276A19F	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg

Description

No Description!

Coordinates

chr12:-:52193551..52201012

Molecular Weight (calculated)

63920.3 Da

IEP (calculated)

8.303

GRAVY (calculated)

-0.174

Length

588 amino acids

Sequence
(BLAST)

001: MNVCDVCGNP KQELVKAGVW CCPICTFDNE DTTNLCDMCG VLRNPLIKGG GGKASAATSD KVEQSNVSKK EIAGEVKKEL VSEEPTSSSA STAKVRRDNM
101: KDRGSSIKSR GYHGVMSNVG NMSVSSNPRN AESRIAPSRS QTKPQKIVCT DQLEDKLNQL NLAIVGHVDS GKSTLSGRLL HLLGQISQKE MHKYEKEAKQ
201: QGKGSFAYAW ALDESAEERE RGITMTVAVA YFNTKSYRVV LLDSPGHRDF VPNMISGATQ ADAAILVVDA SIGAFEAGID VSGGQTREHA QLIKSFGVDQ
301: IIIAINKMDV VGYSKERFDT IKNQLGTFLR ACKFKDSLVL WIPLSAMENQ NLVTSPSDAR LLSWFQGPCL LDAIDSLQPP QRDYSKPILM PICDLVKLPS
401: QGQVSVCGKL ETGALQTGDK VLVIPSREMA TVRSLEHNSQ VCNSAKAGDN VTVNLQGIDV NRVMAGDVLC HPEYPIAVTN HLELKILLLD IAVPILIGSQ
501: LEFHVHHVKE AARVVRILSL LDPKTGKETK KSPRCLLAKQ NAIIEVVLQG IICVEEHSKC KGLGRVSLRA SGRTIALGLV TRVLEKKE

Best Arabidopsis Sequence Match ( AT5G10630.2 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEEAAA EPKEEIAKTQ GLWRCAICTY DNVETMFVCD ICGVLRHPVA GNQSINKNTA PFKFDAPSPD
101: DLVSNGLTSS KTGPKGSGDA SMRQKEKQDS VEQKPLKKGG DSSETSSRGR HDKLDDKGGA GGIKSGKSLP KAKADMSNET SSSSKYMETS ESLTGTMNKM
201: SLIGETENSS DIKIRGPKSQ SKHKPEEWML LDKESDALSQ LNLAIVGHVD SGKSTLSGRL LHLLGRISQK QMHKYEKEAK LQGKGSFAYA WALDESAEER
301: ERGITMTVAV AYFNSKRHHV VLLDSPGHKD FVPNMIAGAT QADAAILVID ASVGAFEAGF DNLKGQTREH ARVLRGFGVE QVIVAINKMD IVGYSKERFD
401: LIKQHVGSFL QSCRFKDSSL TWIPLSAMEN QNLVAAPSDN RLSSWYQGPC LLDAVDSVKS PDRDVSKPLL MPICDAVRST SQGQVSACGK LEAGAVRPGS
501: KVMVMPSGDQ GTIRSLERDS QACTIARAGD NVALALQGID ANQVMAGDVL CHPDFPVSVA THLELMVLVL EGATPILLGS QLEFHVHHAK EAATVVKLVA
601: MLDPKTGQPT KKSPRCLTAK QSAMLEVSLQ NPVCVETFSE SRALGRVFLR SSGRTVAMGK VTRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.