Factsheet for GSMUA_Achr4P05390_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P00050_001	Banana	cytosol	45.15	69.77
CDY61091	Canola	cytosol	11.62	58.96
Solyc03g119290.2.1	Tomato	cytosol	48.68	56.29
Solyc12g036410.1.1	Tomato	cytosol	48.09	55.61
EES13106	Sorghum	cytosol	54.85	53.13
Os04t0677800-02	Rice	cytosol	53.24	53.08
TraesCS2A01G592500.1	Wheat	cytosol	53.24	52.85
CDX85751	Canola	cytosol	54.41	51.82
CDX70362	Canola	cytosol	49.56	51.77
CDX78392	Canola	cytosol	47.65	51.59
Bra006069.1-P	Field mustard	cytosol	47.5	51.27
Zm00001d001827_P005	Maize	cytosol	52.21	51.08
CDY40108	Canola	cytosol	53.82	50.9
TraesCS2B01G591700.6	Wheat	cytosol	52.35	50.0
Bra028577.1-P	Field mustard	cytosol	53.53	49.86
HORVU2Hr1G119310.19	Barley	cytosol	50.29	49.64
GSMUA_Achr5P24440_001	Banana	cytosol	9.26	49.61
AT5G10630.4	Thale cress	cytosol	53.97	49.39
VIT_03s0017g00530.t01	Wine grape	cytosol	53.68	48.03
KRH59057	Soybean	cytosol	54.56	46.78
KRH42938	Soybean	cytosol	53.82	46.51
TraesCS2D01G562000.1	Wheat	cytosol	53.68	44.79
GSMUA_Achr2P19000_001	Banana	cytosol	5.0	44.16
GSMUA_Achr10P...	Banana	cytosol, plastid	13.09	41.4
GSMUA_Achr3P17840_001	Banana	cytosol	8.09	36.18
GSMUA_AchrUn_...	Banana	cytosol	10.29	33.49
GSMUA_Achr3P07900_001	Banana	cytosol	25.88	33.15
GSMUA_Achr10P...	Banana	cytosol	13.53	32.97
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	19.71	32.84
GSMUA_Achr6P02020_001	Banana	mitochondrion	16.32	32.08
GSMUA_Achr10P...	Banana	cytosol	13.09	31.56
GSMUA_Achr3P24830_001	Banana	mitochondrion	18.53	27.69
GSMUA_Achr6P04090_001	Banana	cytosol	7.94	27.41
GSMUA_Achr8P06040_001	Banana	mitochondrion	17.94	26.81
GSMUA_AchrUn_...	Banana	cytosol	6.32	23.5
GSMUA_Achr9P01930_001	Banana	plastid	7.79	20.54
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	9.41	20.45

Protein Annotations

MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	Gene3D:4.10.1060.10	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr4G05390_001	EnsemblPlants:GSMUA_Achr4P05390_001	EnsemblPlants:GSMUA_Achr4T05390_001	InterPro:IPR000795
InterPro:IPR001876	UniProt:M0SLA6	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PRINTS:PR00315
ScanProsite:PS01358	PFscan:PS50199	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF219	SUPFAM:SSF50447
SUPFAM:SSF50465	SUPFAM:SSF52540	SUPFAM:SSF90209	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C
InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0002958656	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:

Description

elongation factor Tu, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G05390_001]

Coordinates

chr4:-:4168273..4174507

Molecular Weight (calculated)

74483.2 Da

IEP (calculated)

7.657

GRAVY (calculated)

-0.178

Length

680 amino acids

Sequence
(BLAST)

001: MTFLILGFGE FCYIRKSTSK LDKSSSKTGA WQCSICTYEN DQYLVSCDVC GVFRDFPGKS GSRDEENVNG TSKKSEVSPL GRSLFDRPPN SMPKVAGGFL
101: CNEAGKSCGA RLISAQLGDL HKMFLAPSLS QTKNIEPFRF DAPSPDDIVS SGKSSRTFPK GWHTLTFLRQ VLQDNEVPES FPPSSLPNNH NEFENDNPSS
201: FEDEPHMLAN NVQSLKLEKH SPKSRNVKAK SNAEYKPEEW MFPDKEGTLS QLNLAIVGHV DSGKSTLSGR FLHLLGQISN KQMHRYEREA KQKGKGSFAY
301: AWALDESVEE RERGITMTVA VAYFLTKKYR VVLLDSPGHR DFVPNMISGS TQADAAVLVI DASVGAFEAG MGGKSVGQTK EHAQLIRSFG VEQLIVAVNK
401: MDQVDFSKDR FDYIKLQLGH FLRTCGFKES LVTWIPLSAL DNQNLLTTAS DIHLSCWYQG YCLLDAIDSL QSPHRDVLKP FLLPICDVIS KYSSGQVTAC
501: GKIETGAIRI GSKVLVMPSG DPAVVRNIER DSSTCNVARA GDNVVASLHG VDQGQVIQGG VLCHPDFPVT IASSLELKIL ILDIATPIII GSQVELHIHH
601: AKQAAKVVKV LSLIDPKTGS AAKKSPRMLV ARQRAIVEVA LEGEICVEEF SNCRALGRVF LRALGSTIAV GIVTRILQEA

Best Arabidopsis Sequence Match ( AT5G10630.3 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEEAAA EPKEEIAKTQ GLWRCAICTY DNVETMFVCD ICGVLRHPVA GNQSINKNTV ESRCKEPVVS
101: KLAKSLFGSV PSNKPKRAVL CLPEHTNLVM EQGPLPGISR GNIHDLYKAF SSKNSCVSIA PFKFDAPSPD DLVSNGLTSS KTGPKGSGDA SMRQKEKQDS
201: VEQKPLKKGG DSSETSSRGR HDKLDDKGGA GGIKSGKSLP KAKADMSNET SSSSKYMETS ESLTGTMNKM SLIGETENSS DIKIRGPKSQ SKHKPEEWML
301: LDKESDALSQ LNLAIVGHVD SGKSTLSGRL LHLLGRISQK QMHKYEKEAK LQGKGSFAYA WALDESAEER ERGITMTVAV AYFNSKRHHV VLLDSPGHKD
401: FVPNMIAGAT QADAAILVID ASVGAFEAGF DNLKGQTREH ARVLRGFGVE QVIVAINKMD IVGYSKERFD LIKQHVGSFL QSCRFKDSSL TWIPLSAMEN
501: QNLVAAPSDN RLSSWYQGPC LLDAVDSVKS PDRDVSKPLL MPICDAVRST SQGQVSACGK LEAGAVRPGS KVMVMPSGDQ GTIRSLERDS QACTIARAGD
601: NVALALQGID ANQVMAGDVL CHPDFPVSVA THLELMVLVL EGATPILLGS QLEFHVHHAK EAATVVKLVA MLDPKTGQPT KKSPRCLTAK QSAMLEVSLQ
701: NPVCVETFSE SRALGRVFLR SSGRTVAMGK VTRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.