Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98668 | Canola | plastid | 93.44 | 61.73 |
| CDX94002 | Canola | plastid | 93.44 | 60.42 |
| CDX82758 | Canola | plastid | 93.44 | 60.21 |
| CDX78988 | Canola | plastid | 93.44 | 56.62 |
| CDY54570 | Canola | plastid | 93.44 | 54.81 |
| CDY31442 | Canola | plastid | 93.44 | 54.81 |
| CDY49485 | Canola | plastid | 92.35 | 49.42 |
| CDY49022 | Canola | plastid | 92.35 | 49.27 |
| Bra020926.1-P | Field mustard | plastid | 92.35 | 39.58 |
| Solyc06g071790.2.1 | Tomato | nucleus, plastid | 90.16 | 36.67 |
| Bra013458.1-P | Field mustard | plastid | 93.44 | 36.38 |
| Bra038805.1-P | Field mustard | plastid | 93.44 | 36.0 |
| KRH54307 | Soybean | mitochondrion, plastid | 93.44 | 35.7 |
| Bra033753.1-P | Field mustard | plastid | 92.35 | 35.65 |
| VIT_17s0000g09370.t01 | Wine grape | plastid | 93.99 | 35.39 |
| KRH63638 | Soybean | endoplasmic reticulum, nucleus, plastid | 92.35 | 35.21 |
| Zm00001d017092_P001 | Maize | plastid | 89.07 | 35.05 |
| Zm00001d050969_P001 | Maize | plastid | 88.52 | 34.76 |
| AT4G20360.1 | Thale cress | plastid | 90.16 | 34.66 |
| PGSC0003DMT400092196 | Potato | plastid | 90.16 | 34.59 |
| EES05366 | Sorghum | plastid | 87.43 | 34.33 |
| Os02t0595700-01 | Rice | plastid | 87.43 | 34.26 |
| Solyc03g112150.1.1 | Tomato | plastid | 89.07 | 34.17 |
| TraesCS6B01G238600.1 | Wheat | plastid | 86.89 | 33.97 |
| PGSC0003DMT400046837 | Potato | cytosol, extracellular, plastid | 88.52 | 33.96 |
| TraesCS6D01G193000.1 | Wheat | nucleus, plastid | 86.89 | 33.83 |
| TraesCS6A01G209800.1 | Wheat | plastid | 86.89 | 33.83 |
| GSMUA_Achr6P06690_001 | Banana | mitochondrion, plastid | 55.74 | 32.59 |
| HORVU6Hr1G053680.5 | Barley | plastid | 86.89 | 30.93 |
| GSMUA_Achr8P06040_001 | Banana | mitochondrion | 62.84 | 25.27 |
| GSMUA_Achr3P24830_001 | Banana | mitochondrion | 61.2 | 24.62 |
| GSMUA_Achr6P04090_001 | Banana | cytosol | 19.67 | 18.27 |
| GSMUA_Achr10P... | Banana | cytosol | 24.04 | 15.6 |
| GSMUA_Achr10P... | Banana | cytosol | 21.31 | 13.98 |
| GSMUA_AchrUn_... | Banana | cytosol | 13.11 | 11.48 |
| GSMUA_Achr7P15510_001 | Banana | cytosol, plasma membrane | 25.14 | 11.27 |
| GSMUA_Achr1P00050_001 | Banana | cytosol | 24.04 | 10.0 |
| GSMUA_Achr9P01930_001 | Banana | plastid | 13.11 | 9.3 |
| GSMUA_Achr3P07900_001 | Banana | cytosol | 22.95 | 7.91 |
| GSMUA_Achr4P05390_001 | Banana | cytosol | 23.5 | 6.32 |
| GSMUA_Achr3P17840_001 | Banana | cytosol | 4.37 | 5.26 |
| GSMUA_Achr6P02020_001 | Banana | mitochondrion | 6.01 | 3.18 |
| GSMUA_Achr2P19000_001 | Banana | cytosol | 0.0 | 0.0 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 0.0 | 0.0 |
| GSMUA_Achr5P24440_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP11820_001 | EnsemblPlants:GSMUA_AchrUn_randomT11820_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG11820_001 | Gene3D:2.40.30.10 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005525 | InterPro:EFTu-like_2 | InterPro:Transl_B-barrel_sf | InterPro:Transl_elong_EF1A/Init_IF2_C | InterPro:Transl_elong_EFTu/EF1A_C |
| PANTHER:PTHR43721 | PANTHER:PTHR43721:SF6 | PFAM:PF03143 | PFAM:PF03144 | SEG:seg | SUPFAM:SSF50447 |
| SUPFAM:SSF50465 | UniParc:UPI000294F48F | UniProt:M0U8E1 | MapMan:17.7.4.1 | : | : |
Description
Elongation factor Tu, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG11820_001]
Coordinates
chrchrUn_random:+:56650324..56651106
Molecular Weight (calculated)
20216.7 Da
IEP (calculated)
6.541
GRAVY (calculated)
-0.101
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAVDSYIPI PQRQTDLPFL LAVEDVFSIT GRGTTRNTTV TGVEMFQKTL DEAMAGDNVG LLLRGIQKDD IQRGMVLAKP GTITPHTKFV AIVYVLKKEE
101: GGRHSPFFAG YRPQFYMRTT DVTGRVTSIM NDKDEEAKMV MPGDRVKMVV ELIMPVACEQ GMRFAIREGG KTVGAGVIQS IIE
101: GGRHSPFFAG YRPQFYMRTT DVTGRVTSIM NDKDEEAKMV MPGDRVKMVV ELIMPVACEQ GMRFAIREGG KTVGAGVIQS IIE
001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE
Arabidopsis Description
TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.