Factsheet for GSMUA_Achr5P24440_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P21440_001
GSMUA_Achr8P09400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G07920.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G07920.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G051280.1	Barley	cytosol	66.93	81.73
CDY09214	Canola	cytosol	92.91	73.75
Zm00001d037882_P001	Maize	cytosol	98.43	67.57
Zm00001d009887_P001	Maize	cytosol	76.38	66.44
OQU75582	Sorghum	cytosol	64.57	65.6
Bra031601.1-P	Field mustard	cytosol	99.21	63.64
OQU75597	Sorghum	cytosol	85.83	62.29
GSMUA_Achr10P...	Banana	cytosol, plastid	99.21	58.6
GSMUA_Achr2P19000_001	Banana	cytosol	31.5	51.95
CDY06287	Canola	cytosol	89.76	50.22
CDY06289	Canola	cytosol	89.76	44.53
CDY67375	Canola	cytosol	89.76	41.01
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	33.86	40.57
GSMUA_Achr3P17840_001	Banana	cytosol	48.03	40.13
GSMUA_Achr6P02020_001	Banana	mitochondrion	99.21	36.42
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	99.21	30.88
Solyc06g009960.1.1	Tomato	cytosol	97.64	30.24
GSMUA_AchrUn_...	Banana	cytosol	48.03	29.19
CDX88757	Canola	cytosol	89.76	28.43
TraesCS5A01G415600.1	Wheat	cytosol	99.21	28.19
Zm00001d036904_P001	Maize	cytosol	99.21	28.19
VIT_08s0040g02330.t01	Wine grape	cytosol	99.21	28.19
HORVU4Hr1G056740.1	Barley	cytosol	99.21	28.19
TraesCS5B01G418200.1	Wheat	cytosol	99.21	28.19
KXG20293	Sorghum	cytosol	99.21	28.19
KXG20294	Sorghum	cytosol	99.21	28.19
KXG20296	Sorghum	cytosol	99.21	28.19
KXG20299	Sorghum	cytosol	99.21	28.19
TraesCS5B01G418100.1	Wheat	cytosol	99.21	28.19
TraesCS4A01G107700.1	Wheat	cytosol	99.21	28.19
Os03t0177400-01	Rice	cytosol	99.21	28.19
TraesCS5A01G415400.1	Wheat	cytosol	99.21	28.19
Os03t0177500-01	Rice	cytosol	99.21	28.19
Os03t0177900-01	Rice	plasma membrane	99.21	28.19
Zm00001d046449_P003	Maize	cytosol	99.21	28.19
Os03t0178000-02	Rice	cytosol	99.21	28.19
TraesCS4B01G196900.1	Wheat	golgi	99.21	28.19
PGSC0003DMT400050663	Potato	cytosol	99.21	28.19
Solyc11g069700.1.1	Tomato	nucleus	99.21	28.19
TraesCS4A01G107600.1	Wheat	cytosol	99.21	28.19
AT1G07920.1	Thale cress	cytosol	99.21	28.06
Bra031602.1-P	Field mustard	cytosol	99.21	28.06
Bra020253.1-P	Field mustard	cytosol	99.21	28.06
Bra018669.1-P	Field mustard	cytosol	99.21	28.06
Bra018242.1-P	Field mustard	cytosol	99.21	28.06
Bra006661.1-P	Field mustard	cytosol	99.21	28.06
Bra002483.1-P	Field mustard	cytosol	99.21	28.06
AT5G60390.2	Thale cress	cytosol	99.21	28.06
AT1G07940.3	Thale cress	cytosol	99.21	28.06
AT1G07930.1	Thale cress	cytosol	99.21	28.06
PGSC0003DMT400020968	Potato	cytosol	98.43	27.96
Zm00001d009870_P008	Maize	cytosol	99.21	27.94
Zm00001d009868_P015	Maize	cytosol	99.21	27.94
Zm00001d037873_P010	Maize	cytosol	99.21	27.94
Zm00001d037875_P014	Maize	cytosol	99.21	27.94
Zm00001d037877_P014	Maize	cytosol	99.21	27.94
Zm00001d037905_P010	Maize	cytosol	99.21	27.94
PGSC0003DMT400053553	Potato	cytosol	98.43	27.9
PGSC0003DMT400053547	Potato	cytosol	98.43	27.9
PGSC0003DMT400059832	Potato	cytosol	98.43	27.9
Solyc06g005060.2.1	Tomato	cytosol	98.43	27.9
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	98.43	27.9
PGSC0003DMT400059830	Potato	cytosol	98.43	27.9
HORVU5Hr1G100200.3	Barley	mitochondrion	99.21	27.16
HORVU5Hr1G100700.3	Barley	plasma membrane	99.21	27.1
CDY10804	Canola	cytosol	89.76	26.64
CDY09211	Canola	cytosol	89.76	26.64
CDY34479	Canola	cytosol	89.76	26.64
CDY61938	Canola	cytosol	89.76	26.64
HORVU6Hr1G085320.3	Barley	cytosol	91.34	26.3
HORVU4Hr1G056820.1	Barley	plasma membrane	98.43	26.26
TraesCS4B01G196800.2	Wheat	golgi	99.21	26.09
CDX95108	Canola	cytosol, extracellular	99.21	25.87
HORVU6Hr1G085370.1	Barley	cytosol	91.34	25.66
CDX93604	Canola	cytosol	89.76	24.78
Bra031605.1-P	Field mustard	cytosol	81.89	24.36
CDY22710	Canola	cytosol	81.89	24.36
CDY22711	Canola	cytosol	81.89	24.36
GSMUA_Achr10P...	Banana	cytosol	48.03	21.86
GSMUA_Achr10P...	Banana	cytosol	48.03	21.63
Bra020251.1-P	Field mustard	cytosol	69.29	21.36
Bra030707.1-P	Field mustard	cytosol	99.21	21.36
CDY58828	Canola	cytosol	81.89	18.31
GSMUA_Achr1P00050_001	Banana	cytosol	46.46	13.41
GSMUA_Achr9P01930_001	Banana	plastid	25.98	12.79
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	28.35	11.5
GSMUA_Achr3P07900_001	Banana	cytosol	48.03	11.49
GSMUA_Achr8P06040_001	Banana	mitochondrion	38.58	10.77
GSMUA_Achr3P24830_001	Banana	mitochondrion	38.58	10.77
CDX70032	Canola	cytosol	25.98	9.59
GSMUA_Achr4P05390_001	Banana	cytosol	49.61	9.26
GSMUA_Achr6P04090_001	Banana	cytosol	11.81	7.61
HORVU4Hr1G056830.1	Barley	cytosol	6.3	2.73
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0
CDY69678	Canola	cytosol	0.0	0.0
CDY67376	Canola	cytosol	0.0	0.0
CDY06290	Canola	cytosol	0.0	0.0
CDY06288	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr5P24440_001	EnsemblPlants:GSMUA_Achr5T24440_001	EnsemblPlantsGene:GSMUA_Achr5G24440_001	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:IPR000795
InterPro:P-loop_NTPase	InterPro:TF_GTP-bd_dom	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	PFAM:PF00009	PFscan:PS51722
PRINTS:PR00315	SUPFAM:SSF52540	UniParc:UPI0002951A03	UniProt:M0T1B9	MapMan:35.1	:

Description

Elongation factor 1-alpha [Source:GMGC_GENE;Acc:GSMUA_Achr5G24440_001]

Coordinates

chr5:-:25779704..25780447

Molecular Weight (calculated)

13870.9 Da

IEP (calculated)

7.894

GRAVY (calculated)

-0.025

Length

127 amino acids

Sequence
(BLAST)

001: MGKEKVHINI VVIGHVDSGK STTTGHLIYK LGERGITIDI ALWKFETTKY YCTVIDAPGH RDFIKNMITG TSQADCAVLI IDSTTGGFEA GISKDGQTRE
101: HALLAFTLGV KQMICCCNKM DATTPKY

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.