Factsheet for GSMUA_Achr5P21440_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03630_001
GSMUA_Achr1P22470_001
GSMUA_Achr2P08100_001
GSMUA_Achr2P11820_001
GSMUA_Achr2P15950_001
GSMUA_Achr2P17690_001
GSMUA_Achr2P19000_001
GSMUA_Achr3P17840_001
GSMUA_Achr3P22170_001
GSMUA_Achr3P31810_001
GSMUA_Achr3P31820_001
GSMUA_Achr4P10430_001
GSMUA_Achr4P16460_001
GSMUA_Achr5P10250_001
GSMUA_Achr5P21440_001
GSMUA_Achr5P24440_001
GSMUA_Achr5P25970_001
GSMUA_Achr6P02020_001
GSMUA_Achr6P04090_001
GSMUA_Achr6P07270_001
GSMUA_Achr6P07630_001
GSMUA_Achr6P08220_001
GSMUA_Achr6P18780_001
GSMUA_Achr6P27030_001
GSMUA_Achr7P14780_001
GSMUA_Achr7P15510_001
GSMUA_Achr7P22720_001
GSMUA_Achr7P23220_001
GSMUA_Achr8P00470_001
GSMUA_Achr8P09400_001
GSMUA_Achr8P30950_001
GSMUA_Achr9P06650_001
GSMUA_Achr9P08580_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54220.1	GSMUA_Achr10P...	AT1G03840.1	17785527
AT3G54220.1	GSMUA_Achr6P27030_001	AT1G03840.1	17785527
AT3G54220.1	GSMUA_Achr7P14780_001	AT1G03840.1	17785527
AT3G54220.1	GSMUA_Achr9P06650_001	AT1G03840.1	17785527
AT3G54220.1	GSMUA_Achr10P...	AT1G07920.1	19228333
AT3G54220.1	GSMUA_Achr10P...	AT1G07920.1	19228333
AT3G54220.1	GSMUA_Achr10P...	AT1G07920.1	19228333
AT3G54220.1	GSMUA_Achr2P19000_001	AT1G07920.1	19228333
AT3G54220.1	GSMUA_Achr3P17840_001	AT1G07920.1	19228333
AT3G54220.1	GSMUA_Achr5P24440_001	AT1G07920.1	19228333
AT3G54220.1	GSMUA_Achr6P02020_001	AT1G07920.1	19228333
AT3G54220.1	GSMUA_Achr6P04090_001	AT1G07920.1	19228333
AT3G54220.1	GSMUA_Achr7P15510_001	AT1G07920.1	19228333
AT3G54220.1	GSMUA_AchrUn_...	AT1G07920.1	19228333
AT3G54220.1	GSMUA_Achr10P...	AT1G07930.1	19228333
AT3G54220.1	GSMUA_Achr10P...	AT1G07930.1	19228333
AT3G54220.1	GSMUA_Achr10P...	AT1G07930.1	19228333
AT3G54220.1	GSMUA_Achr2P19000_001	AT1G07930.1	19228333
AT3G54220.1	GSMUA_Achr3P17840_001	AT1G07930.1	19228333
AT3G54220.1	GSMUA_Achr5P24440_001	AT1G07930.1	19228333
AT3G54220.1	GSMUA_Achr6P02020_001	AT1G07930.1	19228333
AT3G54220.1	GSMUA_Achr6P04090_001	AT1G07930.1	19228333
AT3G54220.1	GSMUA_Achr7P15510_001	AT1G07930.1	19228333
AT3G54220.1	GSMUA_AchrUn_...	AT1G07930.1	19228333
AT3G54220.1	GSMUA_Achr2P17690_001	AT1G27050.1	19228333
AT3G54220.1	GSMUA_Achr11P...	AT1G72160.1	19228333
AT3G54220.1	GSMUA_Achr2P08100_001	AT1G72160.1	19228333
AT3G54220.1	GSMUA_Achr3P22170_001	AT1G72160.1	19228333
AT3G54220.1	GSMUA_Achr5P25970_001	AT1G72160.1	19228333
AT3G54220.1	GSMUA_Achr6P07270_001	AT1G72160.1	19228333
AT3G54220.1	GSMUA_Achr6P18780_001	AT1G72160.1	19228333
AT3G54220.1	GSMUA_Achr7P23220_001	AT1G72160.1	19228333
AT3G54220.1	GSMUA_Achr9P08580_001	AT1G72160.1	19228333
AT3G54220.1	GSMUA_Achr10P...	AT1G78570.1	19228333
AT3G54220.1	GSMUA_Achr3P31810_001	AT1G78570.1	19228333
AT3G54220.1	GSMUA_Achr3P31820_001	AT1G78570.1	19228333
AT3G54220.1	GSMUA_Achr4P10430_001	AT1G78570.1	19228333
AT3G54220.1	GSMUA_Achr10P...	AT2G01540.1	19228333
AT3G54220.1	GSMUA_Achr2P15950_001	AT2G01540.1	19228333
AT3G54220.1	GSMUA_Achr6P07630_001	AT2G01540.1	19228333
AT3G54220.1	GSMUA_Achr1P03630_001	AT2G45660.1	19228333
AT3G54220.1	GSMUA_Achr2P11820_001	AT2G45660.1	19228333
AT3G54220.1	GSMUA_Achr5P10250_001	AT2G45660.1	19228333
AT3G54220.1	GSMUA_Achr6P08220_001	AT3G12280.1	22921914
AT3G54220.1	GSMUA_Achr8P00470_001	AT3G12280.1	22921914
AT3G54220.1	GSMUA_Achr11P...	AT3G54220.1	17785527
AT3G54220.1	GSMUA_Achr5P21440_001	AT3G54220.1	17785527
AT3G54220.1	GSMUA_Achr8P09400_001	AT3G54220.1	17785527
AT3G54220.1	GSMUA_Achr1P22470_001	AT4G37650.1	17446396
AT3G54220.1	GSMUA_Achr4P16460_001	AT4G37650.1	17446396
AT3G54220.1	GSMUA_Achr8P30950_001	AT4G37650.1	17446396
AT3G54220.1	GSMUA_Achr1P22470_001	AT4G37650.1	17785527
AT3G54220.1	GSMUA_Achr4P16460_001	AT4G37650.1	17785527
AT3G54220.1	GSMUA_Achr8P30950_001	AT4G37650.1	17785527
AT3G54220.1	GSMUA_Achr1P22470_001	AT4G37650.1	18500650
AT3G54220.1	GSMUA_Achr4P16460_001	AT4G37650.1	18500650
AT3G54220.1	GSMUA_Achr8P30950_001	AT4G37650.1	18500650
AT3G54220.1	GSMUA_Achr1P22470_001	AT4G37650.1	22921914
AT3G54220.1	GSMUA_Achr4P16460_001	AT4G37650.1	22921914
AT3G54220.1	GSMUA_Achr8P30950_001	AT4G37650.1	22921914
AT3G54220.1	GSMUA_Achr7P22720_001	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plastid	67.33	82.93
Bra007056.1-P	Field mustard	mitochondrion, plastid	33.52	75.0
GSMUA_Achr8P09400_001	Banana	cytosol	65.49	68.9
KXG22896	Sorghum	cytosol, plasma membrane	49.65	66.6
HORVU5Hr1G045920.2	Barley	cytosol	49.36	59.66
TraesCS4A01G191300.1	Wheat	cytosol	51.63	59.16
Os11t0124300-01	Rice	nucleus, plastid	54.17	58.83
Os12t0122000-01	Rice	plastid	54.88	58.79
TraesCS5B01G143100.1	Wheat	plastid	52.9	58.62
CDX78219	Canola	nucleus, plastid	49.65	58.21
TraesCS5D01G148000.1	Wheat	plastid	53.75	58.19
CDX73496	Canola	nucleus, plastid	51.06	58.04
TraesCS5A01G144000.1	Wheat	plastid	53.04	57.87
Zm00001d052380_P001	Maize	plastid	53.75	56.89
TraesCS4B01G124000.1	Wheat	plastid	54.31	56.55
TraesCS4D01G122000.1	Wheat	plastid	54.17	56.41
Zm00001d005029_P001	Maize	plastid	53.04	55.31
OQU82754	Sorghum	plastid	54.74	54.43
AT3G54220.1	Thale cress	nucleus, plastid	50.07	54.21
VIT_08s0056g00050.t01	Wine grape	nucleus	57.43	51.92
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	21.36	49.03
Solyc10g074680.1.1	Tomato	cytosol	53.04	45.4
KRH40615	Soybean	nucleus, plastid	52.48	45.08
PGSC0003DMT400043358	Potato	cytosol	52.62	45.04
KRH00551	Soybean	nucleus, plastid	52.05	43.71
GSMUA_Achr1P16230_001	Banana	cytosol	16.83	33.43
GSMUA_Achr8P09690_001	Banana	cytosol	19.66	31.17
GSMUA_Achr8P18250_001	Banana	cytosol	20.93	30.9
GSMUA_Achr1P09360_001	Banana	cytosol	15.98	30.62
GSMUA_Achr1P19470_001	Banana	nucleus	15.84	29.24
GSMUA_Achr7P16880_001	Banana	cytosol	15.56	29.02
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	19.38	28.96
GSMUA_Achr10P...	Banana	cytosol	19.38	28.66
GSMUA_AchrUn_...	Banana	cytosol	15.28	28.27
GSMUA_Achr6P17870_001	Banana	cytosol	17.26	27.35
GSMUA_Achr10P...	Banana	nucleus	16.12	25.97
GSMUA_Achr8P01180_001	Banana	nucleus	16.69	25.82
GSMUA_Achr1P21300_001	Banana	nucleus	18.39	25.19
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	21.64	25.04
GSMUA_Achr3P30530_001	Banana	cytosol	20.37	24.96
GSMUA_AchrUn_...	Banana	cytosol	18.67	24.67
GSMUA_Achr4P07320_001	Banana	cytosol	19.24	24.24
GSMUA_Achr1P18840_001	Banana	cytosol	20.93	24.1
GSMUA_Achr6P20830_001	Banana	nucleus	20.37	23.61
GSMUA_Achr7P05850_001	Banana	mitochondrion	21.36	23.23
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	21.5	17.63
GSMUA_Achr11P...	Banana	cytosol	19.52	12.52

Protein Annotations

EnsemblPlants:GSMUA_Achr5P21440_001	EnsemblPlants:GSMUA_Achr5T21440_001	EnsemblPlantsGene:GSMUA_Achr5G21440_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
ncoils:Coil	PANTHER:PTHR31636	PANTHER:PTHR31636:SF12	PFAM:PF03514	PFscan:PS50985	SEG:seg
UniParc:UPI0002967F41	UniProt:M0T0H3	MapMan:15.5.12	:	:	:

Description

Protein SCARECROW [Source:GMGC_GENE;Acc:GSMUA_Achr5G21440_001]

Coordinates

chr5:+:23573193..23580094

Molecular Weight (calculated)

76453.1 Da

IEP (calculated)

6.297

GRAVY (calculated)

-0.265

Length

707 amino acids

Sequence
(BLAST)

001: MASTSFLLFP PPAHDSSPSS ADQPNSNCSS SSSSSLIRAN SSPLPPLQPL LLLPPQQFHY FRQQQHQQEE QLLQLLYLQQ QQQQQQQQQE EQDKMVRKRL
101: ASELDLQSDS PYGPARLSRR TTTGASSSSS ANPTFLGDVL PGQPSPLFNP PSTLPVDVGQ QSAAASLVSA SAIGGGGGSS DDAGVGTAWV DGIIRDIINS
201: SAGGEVSIPQ IVNSVREIVH PCNPGLAALL EFRLQSLSSD PSPAAALHSL PNSAALDPSD KRRRDTRVAP PLPETVQAPK RANQAPPFTF APAQPQPQPQ
301: PQRSSTSVSS DEATAATAAA SAAAAAAARK REEMQQRKRD EEGLHLLTLL LHCAEAVAAD NLEEANRLLL EISELSTPFG TSAQRVAAYF SEAMSARLVS
401: SCLGLYAPLP TVPHRHRLAS AFQVFNGISP FVKFSHFTAN QAIQEAFERE DRVHIIDFDI MQGLQWPGLF HILASRPGGP PRVRLTGLGS SMDALEATGK
501: RLSDFAETLG LPFEFVPVAE KVGNLDPERL GVSRREALAV HWLHHSLYDV TGSDTNTLWL LQRLAPKIVT MVEQDLSQAG SFLARFVEAI HYYSALFDSL
601: GASYGEDSQE RHIVKFSNWR EKLSQSGFRG VSLAGNAAAQ ATLLLGMFPS DGYTLVEENG TLKLGWKDLC LLTASAWRPI NHHQAAATST LWSMTKTIGA
701: KMDLNFF

Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)

001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS

Arabidopsis Description

SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.