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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P22470_001
GSMUA_Achr4P16460_001
GSMUA_Achr5P21440_001
GSMUA_Achr6P08220_001
GSMUA_Achr7P22720_001
GSMUA_Achr8P00470_001
GSMUA_Achr8P09400_001
GSMUA_Achr8P09690_001
GSMUA_Achr8P30950_001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G03840.1 GSMUA_Achr11P... AT3G54220.1 17785527
AT1G03840.1 GSMUA_Achr5P21440_001 AT3G54220.1 17785527
AT1G03840.1 GSMUA_Achr8P09400_001 AT3G54220.1 17785527
AT1G03840.1 GSMUA_Achr1P22470_001 AT4G37650.1 17785527
AT1G03840.1 GSMUA_Achr4P16460_001 AT4G37650.1 17785527
AT1G03840.1 GSMUA_Achr8P30950_001 AT4G37650.1 17785527
AT1G03840.1 GSMUA_Achr7P22720_001 AT5G03150.1 17785527
AT5G44160.1 GSMUA_Achr11P... AT1G50420.1 21798944
AT5G44160.1 GSMUA_Achr11P... AT1G50420.1 21798944
AT5G44160.1 GSMUA_Achr8P09690_001 AT1G50420.1 21798944
AT5G44160.1 GSMUA_Achr6P08220_001 AT3G12280.1 22921914
AT5G44160.1 GSMUA_Achr8P00470_001 AT3G12280.1 22921914
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY14910 Canola nucleus 29.13 78.2
Bra036013.1-P Field mustard nucleus 31.93 72.15
CDY72283 Canola nucleus 38.1 71.96
GSMUA_Achr3P25410_001 Banana nucleus 45.94 50.31
GSMUA_Achr2P08460_001 Banana nucleus 43.98 49.84
GSMUA_Achr10P... Banana nucleus 52.38 49.6
GSMUA_Achr2P16690_001 Banana nucleus 50.98 49.46
GSMUA_Achr9P06650_001 Banana nucleus 49.58 48.23
GSMUA_Achr7P13540_001 Banana nucleus 48.74 47.67
GSMUA_AchrUn_... Banana mitochondrion, nucleus 48.46 47.53
GSMUA_Achr6P27030_001 Banana nucleus 46.22 46.61
GSMUA_Achr5P22140_001 Banana nucleus 49.58 46.46
VIT_12s0028g03030.t01 Wine grape nucleus 55.18 46.14
GSMUA_Achr2P08910_001 Banana nucleus 48.18 44.68
GSMUA_Achr7P09150_001 Banana nucleus 50.42 43.9
CDY22307 Canola nucleus 56.3 43.32
Bra033724.1-P Field mustard nucleus 56.3 43.32
CDX94759 Canola nucleus 55.74 42.89
AT5G44160.1 Thale cress nucleus 55.46 42.49
GSMUA_Achr5P11770_001 Banana nucleus, plastid 47.06 42.21
GSMUA_Achr3P13990_001 Banana nucleus 50.14 42.02
CDY18188 Canola nucleus 56.3 41.96
Bra015271.1-P Field mustard nucleus 56.3 41.7
GSMUA_Achr7P22720_001 Banana mitochondrion 32.77 41.64
CDX89862 Canola nucleus 55.74 41.46
Bra032541.1-P Field mustard nucleus 56.86 41.43
CDY32514 Canola nucleus 56.86 41.43
GSMUA_Achr10P... Banana nucleus 51.82 41.2
PGSC0003DMT400024272 Potato nucleus 56.86 41.01
Solyc07g053570.2.1 Tomato nucleus 56.86 40.44
GSMUA_Achr8P10040_001 Banana nucleus 50.42 40.27
KRH22332 Soybean nucleus 53.22 40.08
GSMUA_Achr1P17940_001 Banana nucleus 52.1 39.83
AT1G03840.1 Thale cress nucleus 56.3 39.72
KRH55868 Soybean nucleus 52.66 39.66
KRH25657 Soybean nucleus 52.1 39.49
KRH49655 Soybean nucleus 39.78 39.23
GSMUA_Achr5P06450_001 Banana nucleus 52.1 39.08
KRH26995 Soybean nucleus 52.38 38.96
GSMUA_Achr11P... Banana nucleus 44.82 38.65
GSMUA_Achr1P07110_001 Banana nucleus 50.42 37.04
GSMUA_Achr9P23870_001 Banana nucleus 44.82 36.87
GSMUA_Achr10P... Banana nucleus 49.02 36.53
GSMUA_Achr4P11810_001 Banana mitochondrion, nucleus 49.02 35.71
GSMUA_Achr4P14030_001 Banana nucleus 53.22 34.99
GSMUA_AchrUn_... Banana mitochondrion, nucleus 47.34 34.56
GSMUA_Achr7P24170_001 Banana nucleus 48.18 34.26
GSMUA_Achr11P... Banana nucleus 48.18 33.66
GSMUA_Achr3P29940_001 Banana nucleus 54.62 33.56
GSMUA_Achr4P04310_001 Banana nucleus 44.26 33.4
GSMUA_Achr11P... Banana nucleus 49.58 33.21
GSMUA_Achr7P25960_001 Banana nucleus 54.06 32.6
GSMUA_Achr1P02080_001 Banana nucleus 49.86 32.54
GSMUA_Achr4P07200_001 Banana nucleus 49.02 32.41
GSMUA_Achr4P05240_001 Banana nucleus 44.82 32.0
GSMUA_Achr7P18610_001 Banana nucleus 33.61 31.75
GSMUA_Achr6P02490_001 Banana nucleus 32.77 31.62
GSMUA_Achr10P... Banana nucleus 33.33 31.07
GSMUA_Achr5P23130_001 Banana nucleus 33.05 31.05
GSMUA_Achr11P... Banana nucleus 46.22 29.15
GSMUA_Achr2P21680_001 Banana nucleus, plastid 30.53 28.46
GSMUA_Achr3P20220_001 Banana nucleus 33.33 28.07
GSMUA_Achr10P... Banana nucleus 30.25 27.07
GSMUA_AchrUn_... Banana nucleus 50.14 20.14
Protein Annotations
MapMan:15.5.15Gene3D:3.30.160.60GO:GO:0003674GO:GO:0003676GO:GO:0005488EnsemblPlantsGene:GSMUA_Achr7G14780_001
EnsemblPlants:GSMUA_Achr7P14780_001EnsemblPlants:GSMUA_Achr7T14780_001InterPro:IPR013087UniProt:M0THL5PFAM:PF00096ScanProsite:PS00028
PFscan:PS50157PANTHER:PTHR10593PANTHER:PTHR10593:SF26SMART:SM00355SUPFAM:SSF57667UniParc:UPI000295193F
InterPro:Znf_C2H2_sfInterPro:Znf_C2H2_type::::
Description
Zinc finger protein MAGPIE [Source:GMGC_GENE;Acc:GSMUA_Achr7G14780_001]
Coordinates
chr7:+:11876364..11878036
Molecular Weight (calculated)
39714.1 Da
IEP (calculated)
9.894
GRAVY (calculated)
-0.576
Length
357 amino acids
Sequence
(BLAST)
001: MSGEAISKAF GSMQPCLDSN PPAAKKKRNL PGTPGKQKQH TGIELYPFTF DHPEAEVIAL SPKTLLATNR FVCEICGKGF QRDQNLQLHR RGHNLPWKLR
101: QRSSKEPRKR VYVCPEPTCI HHNPARALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TREYRCDCGT LFSRRDSFIT HRAFCDALAQ
201: ETARVTAAFN NVESNMLQQF PITVTEAETS QPLLGSLPAL FSSQQRHLIA VSDTSATALL QKAAQIGVTS SIPFTGSFES PKGQNANVRD RFDGLFSSRS
301: QPSNLENIVP NFAVSNTFDV YAARHGSPRR DDIGGETRDF LGVGVHTLSQ PSINGWI
Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.