Factsheet for GSMUA_Achr11P05700_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P25410_001	Banana	nucleus	36.96	46.93
GSMUA_Achr7P14780_001	Banana	nucleus	38.65	44.82
GSMUA_Achr2P08460_001	Banana	nucleus	33.82	44.44
Os01t0935000-01	Rice	nucleus	48.55	42.23
GSMUA_Achr2P16690_001	Banana	nucleus	36.96	41.58
TraesCS3D01G449900.1	Wheat	nucleus	50.97	41.45
GSMUA_Achr8P10040_001	Banana	nucleus	44.69	41.39
TraesCS3B01G497200.1	Wheat	nucleus	50.97	41.29
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	36.23	41.21
GSMUA_Achr7P13540_001	Banana	nucleus	36.23	41.1
EES04172	Sorghum	nucleus	51.21	40.77
GSMUA_Achr5P22140_001	Banana	nucleus	37.44	40.68
GSMUA_Achr2P08910_001	Banana	nucleus	37.2	40.0
GSMUA_Achr9P06650_001	Banana	nucleus	35.27	39.78
Zm00001d042202_P001	Maize	nucleus	50.24	39.62
GSMUA_Achr7P22720_001	Banana	mitochondrion	26.57	39.15
GSMUA_Achr7P09150_001	Banana	nucleus	38.41	38.78
GSMUA_Achr6P27030_001	Banana	nucleus	32.85	38.42
GSMUA_Achr10P...	Banana	nucleus	34.3	37.67
GSMUA_Achr10P...	Banana	nucleus	39.86	36.75
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	34.3	35.68
GSMUA_Achr3P13990_001	Banana	nucleus	35.99	34.98
PGSC0003DMT400063501	Potato	nucleus	29.95	34.44
GSMUA_Achr1P17940_001	Banana	nucleus	38.41	34.05
Solyc01g099340.2.1	Tomato	nucleus	34.54	33.73
GSMUA_Achr5P06450_001	Banana	nucleus	38.41	33.4
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	42.51	33.15
GSMUA_Achr1P07110_001	Banana	nucleus	37.68	32.1
KRG92880	Soybean	nucleus	40.34	31.57
Solyc09g074780.2.1	Tomato	nucleus, plastid	39.37	31.35
GSMUA_Achr7P24170_001	Banana	nucleus	37.92	31.27
KRH33908	Soybean	nucleus, plastid	40.34	31.27
KRH71547	Soybean	nucleus	32.85	31.26
GSMUA_Achr10P...	Banana	nucleus	35.99	31.11
GSMUA_Achr9P23870_001	Banana	nucleus	32.37	30.88
KRG96824	Soybean	nucleus	37.68	30.77
KRG96409	Soybean	nucleus	39.37	30.47
PGSC0003DMT400029550	Potato	nucleus	33.33	30.46
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	35.99	30.41
GSMUA_Achr11P...	Banana	nucleus	37.2	30.14
KRH68150	Soybean	nucleus	32.85	30.02
GSMUA_Achr4P07200_001	Banana	nucleus	39.13	30.0
KRH68532	Soybean	nucleus	36.96	29.88
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	35.27	29.86
GSMUA_Achr4P04310_001	Banana	nucleus	34.06	29.81
GSMUA_Achr4P14030_001	Banana	nucleus	38.89	29.65
GSMUA_Achr6P02490_001	Banana	nucleus	26.33	29.46
GSMUA_Achr1P02080_001	Banana	nucleus	38.65	29.25
GSMUA_Achr11P...	Banana	nucleus	37.44	29.08
GSMUA_Achr4P05240_001	Banana	nucleus	34.54	28.6
GSMUA_Achr7P18610_001	Banana	nucleus	26.09	28.57
GSMUA_Achr3P29940_001	Banana	nucleus	39.86	28.4
GSMUA_Achr5P23130_001	Banana	nucleus	25.85	28.16
VIT_07s0104g01620.t01	Wine grape	nucleus	40.1	27.76
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	25.6	27.68
GSMUA_Achr7P25960_001	Banana	nucleus	38.89	27.2
GSMUA_Achr10P...	Banana	nucleus	24.88	26.89
GSMUA_Achr11P...	Banana	nucleus	36.47	26.68
GSMUA_Achr10P...	Banana	nucleus	24.88	25.81
GSMUA_Achr3P20220_001	Banana	nucleus	25.85	25.24
GSMUA_AchrUn_...	Banana	nucleus	37.68	17.55

Protein Annotations

EnsemblPlants:GSMUA_Achr11P05700_001	EnsemblPlants:GSMUA_Achr11T05700_001	EnsemblPlantsGene:GSMUA_Achr11G05700_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF34
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00029627E8
UniProt:M0RPQ0	MapMan:15.5.15	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G05700_001]

Coordinates

chr11:-:4248330..4253601

Molecular Weight (calculated)

45117.1 Da

IEP (calculated)

10.331

GRAVY (calculated)

-0.467

Length

414 amino acids

Sequence
(BLAST)

001: MSNITGDGGS FSSGTNTGED EVHKQRRLFY GSPAAAANID IAASQLLPVK KKRSLPGTPD PNAEVIALSP TTLMATNRFV CEICHKGFQR DQNLQLHRRG
101: HNLPWKLRQR SSAETRKRVY VCPEPTCVHH HPTRALGDLT GVKKHYCRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGSR EYKCDCGTIF SRRDSFVTHR
201: AFCDALAQEN HKLSQPLMAT MASSLQGHVP GLTMPVQLTD TDHLMPGYMA GGTLSAFSNP PSTSNVRSPM GLDGLIEAQM SRPMAHVSAT APCIPFKAHE
301: LSYQMVGVGG ARSGDQFWDA DGSLKHTVDF LGVRGERRLH CARRRSPLVR RVGFHGSPSA AAAAAAIAPP RSVLVVAAEG GGQRGGAVAS APLLQPGPRL
401: LRRWHRQGLP DLQL

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.