Factsheet for GSMUA_Achr2P21680_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96046	Canola	nucleus	37.34	61.37
GSMUA_Achr10P...	Banana	nucleus	58.49	56.14
GSMUA_Achr5P23130_001	Banana	nucleus	51.44	51.84
Solyc01g005060.2.1	Tomato	nucleus	45.43	51.33
GSMUA_Achr7P18610_001	Banana	nucleus	49.35	50.0
GSMUA_Achr6P02490_001	Banana	nucleus	48.04	49.73
KRH41885	Soybean	nucleus	48.04	48.42
GSMUA_Achr3P20220_001	Banana	nucleus	52.48	47.41
Bra010981.1-P	Field mustard	nucleus	46.21	46.83
CDY36123	Canola	nucleus	46.21	46.83
AT1G25250.3	Thale cress	nucleus	47.0	46.75
CDX84974	Canola	nucleus	46.74	46.74
GSMUA_Achr10P...	Banana	nucleus	46.74	46.74
CDY51986	Canola	nucleus	45.95	46.56
KRH60588	Soybean	nucleus	48.56	46.5
CDY60366	Canola	nucleus	46.48	46.48
CDY04203	Canola	plastid	46.48	46.23
Bra024771.1-P	Field mustard	nucleus	46.21	46.21
CDY04204	Canola	nucleus	43.08	45.96
Solyc06g072360.2.1	Tomato	nucleus	47.0	45.92
VIT_01s0011g06400.t01	Wine grape	nucleus	50.39	45.41
PGSC0003DMT400079735	Potato	nucleus, plastid	51.44	45.08
Zm00001d005871_P002	Maize	nucleus	51.44	44.67
Bra004283.1-P	Field mustard	nucleus	47.26	43.93
PGSC0003DMT400069306	Potato	nucleus	47.0	43.8
AT1G68130.1	Thale cress	nucleus	47.52	43.44
Bra026624.1-P	Field mustard	nucleus	49.61	43.38
Bra004050.1-P	Field mustard	nucleus	46.74	43.34
CDY07400	Canola	nucleus	46.74	43.34
KRH58582	Soybean	nucleus	49.35	42.95
CDY09400	Canola	nucleus	49.09	42.92
VIT_17s0000g01870.t01	Wine grape	nucleus	50.91	42.86
Bra017432.1-P	Field mustard	nucleus	48.56	42.27
KRH38986	Soybean	nucleus	52.22	42.19
KRH42485	Soybean	nucleus	49.35	41.81
TraesCS5D01G240600.1	Wheat	nucleus	53.52	41.75
TraesCS5A01G233700.1	Wheat	nucleus	53.52	41.75
TraesCS5B01G232200.1	Wheat	nucleus	53.52	41.67
CDY15800	Canola	nucleus	48.04	41.63
Bra024841.1-P	Field mustard	nucleus	48.04	41.44
CDY17620	Canola	nucleus	48.04	41.44
CDY04102	Canola	nucleus	48.56	41.43
AT2G01940.3	Thale cress	nucleus	48.04	41.26
CDY63960	Canola	nucleus	48.56	41.24
Solyc03g098070.2.1	Tomato	nucleus	39.16	41.21
KRH48724	Soybean	nucleus	51.96	41.2
Zm00001d020683_P001	Maize	nucleus	53.26	41.05
CDY60095	Canola	nucleus	47.26	40.95
EER96827	Sorghum	nucleus	53.26	40.88
Solyc05g054030.2.1	Tomato	nucleus	39.43	39.63
Zm00001d031759_P001	Maize	nucleus	53.26	39.38
EES13982	Sorghum	nucleus	53.26	38.06
Os08t0467100-01	Rice	nucleus	52.48	37.71
GSMUA_Achr2P08460_001	Banana	nucleus	27.68	33.65
GSMUA_Achr3P25410_001	Banana	nucleus	27.68	32.52
GSMUA_Achr7P22720_001	Banana	mitochondrion	23.76	32.38
GSMUA_Achr7P14780_001	Banana	nucleus	28.46	30.53
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	28.2	29.67
GSMUA_Achr2P16690_001	Banana	nucleus	28.2	29.35
GSMUA_Achr2P08910_001	Banana	nucleus	28.72	28.57
GSMUA_Achr5P22140_001	Banana	nucleus	27.94	28.08
GSMUA_Achr9P06650_001	Banana	nucleus	26.89	28.07
GSMUA_Achr7P13540_001	Banana	nucleus	26.63	27.95
GSMUA_Achr10P...	Banana	nucleus	26.37	26.79
GSMUA_Achr6P27030_001	Banana	nucleus	24.54	26.55
GSMUA_Achr7P09150_001	Banana	nucleus	27.68	25.85
GSMUA_Achr11P...	Banana	nucleus	27.68	25.6
GSMUA_Achr3P13990_001	Banana	nucleus	28.46	25.59
GSMUA_Achr1P17940_001	Banana	nucleus	30.03	24.63
GSMUA_Achr8P10040_001	Banana	nucleus	28.46	24.38
GSMUA_Achr10P...	Banana	nucleus	28.46	24.28
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	25.07	24.12
GSMUA_Achr10P...	Banana	nucleus	27.94	22.34
GSMUA_Achr7P24170_001	Banana	nucleus	28.98	22.11
GSMUA_Achr1P07110_001	Banana	nucleus	27.94	22.02
GSMUA_Achr5P06450_001	Banana	nucleus	27.15	21.85
GSMUA_Achr4P07200_001	Banana	nucleus	30.55	21.67
GSMUA_Achr4P14030_001	Banana	nucleus	30.55	21.55
GSMUA_Achr9P23870_001	Banana	nucleus	24.02	21.2
GSMUA_Achr11P...	Banana	nucleus	28.2	21.14
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	26.89	21.02
GSMUA_Achr11P...	Banana	nucleus	29.24	21.01
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	26.11	20.45
GSMUA_Achr3P29940_001	Banana	nucleus	30.55	20.14
GSMUA_Achr4P05240_001	Banana	nucleus	25.85	19.8
GSMUA_Achr4P04310_001	Banana	nucleus	24.28	19.66
GSMUA_Achr7P25960_001	Banana	nucleus	30.03	19.43
GSMUA_Achr1P02080_001	Banana	nucleus	27.42	19.2
GSMUA_Achr11P...	Banana	nucleus	26.63	18.02
GSMUA_AchrUn_...	Banana	nucleus	27.94	12.04

Protein Annotations

EnsemblPlants:GSMUA_Achr2P21680_001	EnsemblPlants:GSMUA_Achr2T21680_001	EnsemblPlantsGene:GSMUA_Achr2G21680_001	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR10593	PANTHER:PTHR10593:SF43
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000294CBF4
UniProt:M0SA09	MapMan:15.5.15	:	:	:	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G21680_001]

Coordinates

chr2:+:21066224..21069291

Molecular Weight (calculated)

42576.2 Da

IEP (calculated)

9.248

GRAVY (calculated)

-0.607

Length

383 amino acids

Sequence
(BLAST)

001: MLRSSPQQAV SALPVNSVSC STASNPPRTP ISSADDDKAG KRKRRPAGTP DPDAEVVSLS PRTLLESDRY VCEICHQGFQ RDQNLQMHRR RHKVPWKLLR
101: RDAAEARKRV FVCPEPSCLH HDPRHALGDL VGIKKHFRRK HSDRRQWACS RCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSRWVHRTL VYYIHGLCTA
201: HGSQCYYHSI GWFHVVVESF IEHQDSCSAT RTFGEPATPR PSSLSWTTSS TSPSTEPTLS GRTTSTAAAA AAAAAAASSL PLALHMAEKE LANAKTIRRQ
301: AQAELENAYL LRDHTAKQIN LMLLQITCHS CRKQLQSKPG TVWEEGPKAA ASYAPSAMAE SKEDDSNDGS HFRSMNRIED VCF

Best Arabidopsis Sequence Match ( AT1G25250.1 )
(BLAST)

001: MELTQPIREN GDPQGHQLTD PDAEVVSLSP RTLLESDRYV CEICNQGFQR DQNLQMHRRR HKVPWKLLKR DKKDEEVRKR VYVCPEPTCL HHDPCHALGD
101: LVGIKKHFRR KHSVHKQWVC ERCSKGYAVQ SDYKAHLKTC GSRGHSCDCG RVFSRVESFI EHQDTCTIRQ PQPTNHRHLQ QHTMGLDAPS RTTSTASFGP
201: LLHGLPLLRP PRPSNQHSPA FAYPFNASSA PFESLELQLS IGMARTSAQA RHNEKRETSL TKERANEEAR KAEETRQEAK RQIEMAEKDF EKAKRIREEA
301: KTELEKAHVV REEAIKRINA TMMEITCHSC KQLFQLPVTA DESTSSLVMS YVSSATTEGE CE

Arabidopsis Description

AtIDD16IDD16 [Source:UniProtKB/TrEMBL;Acc:A0A178WG74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.