Factsheet for Bra010981.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36123	Canola	nucleus	100.0	100.0
AT1G25250.3	Thale cress	nucleus	84.13	82.6
Bra024771.1-P	Field mustard	nucleus	83.6	82.51
Bra004050.1-P	Field mustard	nucleus	61.38	56.17
Bra004283.1-P	Field mustard	nucleus	61.11	56.07
Bra036013.1-P	Field mustard	nucleus	22.22	53.16
VIT_01s0011g06400.t01	Wine grape	nucleus	58.99	52.47
GSMUA_Achr7P18610_001	Banana	nucleus	52.12	52.12
GSMUA_Achr6P02490_001	Banana	nucleus	50.79	51.89
KRH58582	Soybean	nucleus	59.52	51.14
GSMUA_Achr5P23130_001	Banana	nucleus	51.06	50.79
GSMUA_Achr10P...	Banana	nucleus	50.0	49.35
KRH42485	Soybean	nucleus	58.99	49.34
Bra026624.1-P	Field mustard	nucleus	56.88	49.09
Bra017432.1-P	Field mustard	nucleus	56.08	48.18
GSMUA_Achr3P20220_001	Banana	nucleus	53.17	47.41
Bra024841.1-P	Field mustard	nucleus	55.29	47.07
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	46.83	46.21
Solyc05g054030.2.1	Tomato	nucleus	43.65	43.31
GSMUA_Achr10P...	Banana	nucleus	45.5	43.11
TraesCS4B01G230800.1	Wheat	nucleus, plastid	45.5	42.47
Zm00001d005871_P002	Maize	nucleus	49.21	42.18
TraesCS4D01G232000.1	Wheat	nucleus, plastid	45.77	41.79
TraesCS4A01G074700.1	Wheat	nucleus, plastid	45.77	41.69
TraesCS5A01G233700.1	Wheat	nucleus	52.91	40.73
TraesCS5D01G240600.1	Wheat	nucleus	52.91	40.73
HORVU4Hr1G064740.2	Barley	nucleus, plastid	45.77	40.71
TraesCS5B01G232200.1	Wheat	nucleus	52.91	40.65
Os03t0237250-01	Rice	plastid	46.56	40.18
Zm00001d020683_P001	Maize	nucleus	51.32	39.03
Zm00001d028361_P001	Maize	nucleus, plastid	46.3	38.72
EER96827	Sorghum	nucleus	50.79	38.48
Zm00001d047976_P001	Maize	nucleus, plastid	45.24	38.17
Zm00001d031759_P001	Maize	nucleus	52.12	38.03
KXG39813	Sorghum	nucleus, plastid	46.03	37.91
Os08t0467100-01	Rice	nucleus	53.17	37.71
EES13982	Sorghum	nucleus	52.91	37.31
Bra018535.1-P	Field mustard	plastid	29.37	27.48
Bra036098.1-P	Field mustard	nucleus, plastid	29.89	25.92
Bra033840.1-P	Field mustard	nucleus	29.89	24.94
Bra033724.1-P	Field mustard	nucleus	30.16	24.57
Bra030886.1-P	Field mustard	nucleus	27.51	23.8
Bra015271.1-P	Field mustard	nucleus	29.63	23.24
Bra037151.1-P	Field mustard	nucleus	29.63	22.76
Bra032541.1-P	Field mustard	nucleus	29.37	22.65
Bra026819.1-P	Field mustard	nucleus	27.78	22.48
Bra005741.1-P	Field mustard	nucleus	29.1	21.83
Bra009549.1-P	Field mustard	nucleus	29.37	21.51
Bra026204.1-P	Field mustard	nucleus, plastid	25.4	21.33
Bra024833.1-P	Field mustard	plastid	28.31	20.86
Bra027394.1-P	Field mustard	nucleus	27.78	20.79
Bra021510.1-P	Field mustard	nucleus	28.04	20.78
Bra026616.1-P	Field mustard	nucleus	28.04	20.74
Bra026203.1-P	Field mustard	nucleus, plastid	25.13	20.47
Bra001523.1-P	Field mustard	nucleus	27.51	20.31
Bra023223.1-P	Field mustard	plastid	24.87	19.58
Bra024834.1-P	Field mustard	nucleus, plastid	28.31	19.38
Bra026617.1-P	Field mustard	nucleus	29.1	18.64
Bra040974.1-P	Field mustard	nucleus, plastid	28.84	18.63
Bra038293.1-P	Field mustard	nucleus	29.63	12.64

Protein Annotations

EnsemblPlants:Bra010981.1	EnsemblPlants:Bra010981.1-P	EnsemblPlantsGene:Bra010981	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR10593
PANTHER:PTHR10593:SF43	PFAM:PF12874	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI0002545C60	UniProt:M4D3C7	MapMan:15.5.15	:	:

Description

AT1G25250 (E=2e-147) AtIDD16 | AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA08:+:17395839..17397934

Molecular Weight (calculated)

43041.3 Da

IEP (calculated)

8.980

GRAVY (calculated)

-0.738

Length

378 amino acids

Sequence
(BLAST)

001: MIDYEKNNNH QNFPSSSSPD LLLAINGAAV INKRKRRPAG TPDPDADVVS LSPRTLLESD RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKREKKDEEV
101: RKRVYVCPEP TCLHHDPCHA LGDLVGIKKH FRRKHSVIKQ WVCERCSKGY AVQSDYKAHL KTCGSRGHSC DCGRVFSRVE SFIEHQDTCT IRGPQPTNHR
201: PLHQNTEGHA TPSRTFLTPS INPLLHGVPF LRSPQASHQQ SLAFASSAPF ENLQLQLSIG MTKTQVKRNE KGESSLTMER AIEEARRAEK MRQEARRQIE
301: MAQVDFEKAK NIRKEAKAEL EKAHVVREEA IKRINATMLE ITCHSCKDLF QLPVMADEST SSLVTCYVSS ATTEGEAE

Best Arabidopsis Sequence Match ( AT1G25250.3 )
(BLAST)

001: MIHYEQNNNL QNLPSSSSND LLLGINGADA THKRKRRPAG TPDPDAEVVS LSPRTLLESD RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKRDKKDEEV
101: RKRVYVCPEP TCLHHDPCHA LGDLVGIKKH FRRKHSVHKQ WVCERCSKGY AVQSDYKAHL KTCGSRGHSC DCGRVFSRVE SFIEHQDTCT IRQPQPTNHR
201: HLQQHTMGLD APSRTTSTAS FGPLLHGLPL LRPPRPSNQH SPAFAYPFNA SSAPFESLEL QLSIGMARTS AQARHNEKRE TSLTKERANE EARKAEETRQ
301: EAKRQIEMAE KDFEKAKRIR EEAKTELEKA HVVREEAIKR INATMMEITC HSCKQLFQLP VTADESTSSL VMSYVSSATT EGECE

Arabidopsis Description

AtIDD16IDD16 [Source:UniProtKB/TrEMBL;Acc:A0A178WG74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.