Factsheet for Bra018535.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67587	Canola	cytosol, nucleus	55.69	100.0
CDX97281	Canola	nucleus, plastid	94.06	98.7
CDX91304	Canola	nucleus, plastid	98.02	98.02
AT4G02670.2	Thale cress	nucleus, plastid	82.43	82.43
Bra036013.1-P	Field mustard	nucleus	25.5	65.19
KRH67268	Soybean	nucleus	38.37	59.39
GSMUA_Achr3P25410_001	Banana	nucleus	39.36	48.77
GSMUA_Achr2P08910_001	Banana	nucleus	42.33	44.42
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	46.53	42.44
KRG95590	Soybean	nucleus	46.29	40.65
KRH32064	Soybean	nucleus	46.29	40.39
Solyc09g065670.2.1	Tomato	nucleus	46.78	40.21
KRH71370	Soybean	nucleus	45.54	40.17
PGSC0003DMT400049788	Potato	nucleus	47.03	39.83
Bra036098.1-P	Field mustard	nucleus, plastid	41.83	38.76
Bra030886.1-P	Field mustard	nucleus	41.58	38.44
TraesCS6D01G116300.1	Wheat	nucleus	38.61	38.24
TraesCS6B01G154000.1	Wheat	nucleus	38.61	38.14
TraesCS6A01G126000.1	Wheat	nucleus	39.36	38.04
Bra033840.1-P	Field mustard	nucleus	40.1	35.76
Bra033724.1-P	Field mustard	nucleus	40.84	35.56
Bra027394.1-P	Field mustard	nucleus	44.31	35.45
Bra015271.1-P	Field mustard	nucleus	42.08	35.27
KXG38489	Sorghum	nucleus	37.13	35.05
Bra021510.1-P	Field mustard	nucleus	43.56	34.51
Bra032541.1-P	Field mustard	nucleus	41.58	34.29
Zm00001d032922_P001	Maize	nucleus	36.88	34.17
Bra037151.1-P	Field mustard	nucleus	41.58	34.15
Bra001523.1-P	Field mustard	nucleus	41.83	33.01
Bra005741.1-P	Field mustard	nucleus	41.09	32.94
Bra026616.1-P	Field mustard	nucleus	41.09	32.49
Bra026819.1-P	Field mustard	nucleus	37.13	32.12
Bra009549.1-P	Field mustard	nucleus	40.84	31.98
Bra024833.1-P	Field mustard	plastid	40.35	31.77
Os10t0419200-01	Rice	nucleus	37.13	31.58
Bra024834.1-P	Field mustard	nucleus, plastid	42.08	30.8
Bra026204.1-P	Field mustard	nucleus, plastid	34.16	30.67
Bra026203.1-P	Field mustard	nucleus, plastid	34.65	30.17
Bra010981.1-P	Field mustard	nucleus	27.48	29.37
Bra040974.1-P	Field mustard	nucleus, plastid	42.33	29.23
Bra026617.1-P	Field mustard	nucleus	41.83	28.64
Bra024771.1-P	Field mustard	nucleus	26.49	27.94
Bra004283.1-P	Field mustard	nucleus	28.47	27.91
Bra004050.1-P	Field mustard	nucleus	27.97	27.36
Bra023223.1-P	Field mustard	plastid	31.93	26.88
Bra017432.1-P	Field mustard	nucleus	28.22	25.91
Bra024841.1-P	Field mustard	nucleus	28.47	25.9
Bra026624.1-P	Field mustard	nucleus	27.72	25.57
Bra038293.1-P	Field mustard	nucleus	39.36	17.95

Protein Annotations

EnsemblPlants:Bra018535.1	EnsemblPlants:Bra018535.1-P	EnsemblPlantsGene:Bra018535	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF65
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002547320
UniProt:M4DPU4	MapMan:15.5.15	:	:	:	:

Description

AT4G02670 (E=2e-165) AtIDD12 | AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA05:+:9027424..9029822

Molecular Weight (calculated)

44554.4 Da

IEP (calculated)

9.271

GRAVY (calculated)

-0.578

Length

404 amino acids

Sequence
(BLAST)

001: MDMFSSRNWS YRPSSLSAEA SASSGNTVSA IQDFNGLNNV ISSRLCTHTE TQKTKKRRGV PGNPDPDAEV VALSPKTLLA TNRFVCEICN KGFQRDQNLQ
101: LHRRGHNLPW KLKQKNTKEQ QKKKVYVCPD TNCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKFY AVQSDWKAHT KVCGTREYRC DCGTLFSRKD
201: SFITHRAFCD ALAEESARII STPSTNLTNL SPSFQDRHFM LNKSSSSSLL FTSPPPYVNP APHPSTAAAL SATALLQKAT ALSSGPFGGG GQTRSVGHHR
301: PLTTVNEFLG ADRVMMTSSS SSEYDQLVVD GLTSTWQKAD HLTRDFLGLT GHGVHVSVTP GDLLEYAGGV SLPMSTYLTE SHDHESSSSF QKAYDLGFTG
401: PHNM

Best Arabidopsis Sequence Match ( AT4G02670.2 )
(BLAST)

001: MDMFSSHSLS YKLSSLSTEA SASSGNNTLS TIQEFSGFHN VISSVCTHTE THKPKKKRGL PGNPDPDAEV IALSPKTLLA TNRFVCEICN KGFQRDQNLQ
101: LHRRGHNLPW KLKQKNTKEQ QKKKVYVCPE TNCAHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKFY AVQSDWKAHT KICGTRDYRC DCGTLFSRKD
201: TFITHRAFCD ALAEESARLH STSSSNLTNP NPNFQGHHFM FNKSSSLLFT SSPLFIEPSL STAALSTPPT AALSATALLQ KATSLSSTTF GGGGQTRSIG
301: HHRHLTNVNE FLGVDRVMMT SASSSEYDQL VVDGFTSTWQ KADRLTRDFL GLTGHGGHVS VRPGDMLEYA GGVAFPMSAY DTESHDHSFQ KAYDHLGFSG
401: AHRM

Arabidopsis Description

AtIDD12Indeterminate(ID)-domain 12 [Source:UniProtKB/TrEMBL;Acc:A0A1P8B4I0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.