Factsheet for TraesCS6A01G126000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G116300.1	Wheat	nucleus	93.78	96.08
TraesCS6B01G154000.1	Wheat	nucleus	91.15	93.15
Os10t0419200-01	Rice	nucleus	71.77	63.16
KRH67268	Soybean	nucleus	34.93	55.94
GSMUA_Achr3P25410_001	Banana	nucleus	40.67	52.15
GSMUA_Achr2P08910_001	Banana	nucleus	47.85	51.95
KXG38489	Sorghum	nucleus	46.41	45.33
Zm00001d032922_P001	Maize	nucleus	45.93	44.04
CDX97281	Canola	nucleus, plastid	38.04	41.3
Bra018535.1-P	Field mustard	plastid	38.04	39.36
CDX91304	Canola	nucleus, plastid	37.8	39.11
AT4G02670.2	Thale cress	nucleus, plastid	36.6	37.87
KRG95590	Soybean	nucleus	39.71	36.09
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	37.56	35.44
TraesCS3A01G170700.1	Wheat	nucleus	40.43	34.56
Solyc09g065670.2.1	Tomato	nucleus	38.76	34.47
KRH71370	Soybean	nucleus	37.56	34.28
KRH32064	Soybean	nucleus	37.8	34.13
PGSC0003DMT400049788	Potato	nucleus	38.76	33.96
TraesCS3A01G105100.1	Wheat	nucleus	40.19	33.87
TraesCS3A01G205800.1	Wheat	nucleus	35.65	31.24
TraesCS4A01G041400.1	Wheat	nucleus	36.12	31.01
TraesCS4A01G008900.1	Wheat	nucleus	35.89	30.93
TraesCS5A01G356100.1	Wheat	nucleus, plastid	39.0	29.91
TraesCS2A01G289500.1	Wheat	nucleus	33.73	29.19
TraesCS6A01G254500.1	Wheat	nucleus	39.71	28.72
TraesCS4A01G074700.1	Wheat	nucleus, plastid	28.23	28.43
TraesCS2A01G403200.2	Wheat	nucleus	39.71	25.04
CDY67587	Canola	cytosol, nucleus	13.4	24.89
TraesCS5A01G233700.1	Wheat	nucleus	27.27	23.22
TraesCS2A01G188400.2	Wheat	nucleus	37.8	19.04

Protein Annotations

EnsemblPlants:TraesCS6A01G126000.1	EnsemblPlantsGene:TraesCS6A01G126000	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF46	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr6A:+:99423628..99426330

Molecular Weight (calculated)

45815.4 Da

IEP (calculated)

8.602

GRAVY (calculated)

-0.498

Length

418 amino acids

Sequence
(BLAST)

001: MMLCDLSSDR EATGSSSHGG VGDFGFSSHV LLSPLFAPAA TPTPTLLPRP PLPMLLEEPA RAKRKRSQPG NPDPGAEVIA LSPRTLVATN RFVCEICNKG
101: FQRDQNLQLH RRGHNLPWKL RQRTVLLPRP GGDGSGSGAP RKRVYVCPEP TCVHHDPARA LGDLTGIKKH FSRKHGEKRW KCERCAKRYA VHSDWKAHVK
201: NCGTREYRCD CGILFSRKDS LLTHRAFCDA LAEESARLIA AANNIIPTTT TCNNNGNNNS GSSSNDINNM LMPSNSSPLF LPFSSPPHAQ NPNPLMFLSQ
301: EPHHQHHQVL PPFQPLTYLD DLPMTTGSSS TVSTDTVSFR LTPEGSVTMH AGGRHLTRDF LGVDNAGEVE ELQMSVPLCA AAYQGRSIGP TAACCATDLT
401: RQYLGRLPPV NEPWSHNF

Best Arabidopsis Sequence Match ( AT3G45260.1 )
(BLAST)

001: MMMPDDHHPL SFPSYVLHQE HIAPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN SLMTTNRFIC EVCNKGFKRD QNLQLHRRGH NLPWKLKQRT
101: NKEQVKKKVY ICPEKTCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR AFCDALAEES
201: ARFVSVPPAP AYLNNALDVE VNHGNINQNH QQRQLNTTSS QLDQPGFNTN RNNIAFLGQT LPTNVFASSS SPSPRSASDS LQNLWHLQGQ SSHQWLLNEN
301: NNNNNNILQR GISKNQEEHE MKNVISNGSL FSSEARNNTN NYNQNGGQIA SMSATALLQK AAQMGSKRSS SSSSNSKTFG LMTSIFNNKQ AENIKTKEVD
401: ERGFTRDFLG VGSQHRSWPL LMVNHNLPDS SPPASTDGTP TADMNQ

Arabidopsis Description

IDD9Protein indeterminate-domain 9 [Source:UniProtKB/Swiss-Prot;Acc:Q944L3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.