Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G154000.1 | Wheat | nucleus | 95.34 | 95.11 |
| TraesCS6A01G126000.1 | Wheat | nucleus | 96.08 | 93.78 |
| Os10t0419200-01 | Rice | nucleus | 72.3 | 62.11 |
| KRH67268 | Soybean | nucleus | 35.54 | 55.56 |
| GSMUA_Achr3P25410_001 | Banana | nucleus | 41.67 | 52.15 |
| GSMUA_Achr2P08910_001 | Banana | nucleus | 48.53 | 51.43 |
| KXG38489 | Sorghum | nucleus | 47.79 | 45.56 |
| Zm00001d032922_P001 | Maize | nucleus | 47.06 | 44.04 |
| CDX97281 | Canola | nucleus, plastid | 38.24 | 40.52 |
| Bra018535.1-P | Field mustard | plastid | 38.24 | 38.61 |
| CDX91304 | Canola | nucleus, plastid | 37.99 | 38.37 |
| AT4G02670.2 | Thale cress | nucleus, plastid | 37.25 | 37.62 |
| KRG95590 | Soybean | nucleus | 40.44 | 35.87 |
| VIT_00s0179g00170.t01 | Wine grape | nucleus, plastid | 38.24 | 35.21 |
| TraesCS3D01G171300.1 | Wheat | nucleus | 41.67 | 34.62 |
| Solyc09g065670.2.1 | Tomato | nucleus | 39.46 | 34.26 |
| KRH71370 | Soybean | nucleus | 38.24 | 34.06 |
| KRH32064 | Soybean | nucleus | 38.48 | 33.91 |
| TraesCS3D01G107300.1 | Wheat | nucleus | 40.44 | 33.81 |
| PGSC0003DMT400049788 | Potato | nucleus | 39.22 | 33.54 |
| TraesCS4D01G262500.1 | Wheat | nucleus | 40.93 | 31.75 |
| TraesCS3D01G209800.1 | Wheat | nucleus | 36.52 | 31.43 |
| TraesCS3D01G449900.1 | Wheat | nucleus | 38.97 | 31.24 |
| TraesCS4D01G294900.1 | Wheat | nucleus | 36.76 | 30.99 |
| TraesCS2D01G287500.1 | Wheat | nucleus | 34.56 | 30.59 |
| TraesCS5D01G364900.1 | Wheat | nucleus, plastid | 40.2 | 29.98 |
| TraesCS6D01G235800.1 | Wheat | nucleus | 40.93 | 28.89 |
| TraesCS4D01G232000.1 | Wheat | nucleus, plastid | 28.68 | 28.26 |
| TraesCS2D01G400300.2 | Wheat | nucleus | 40.44 | 24.92 |
| CDY67587 | Canola | cytosol, nucleus | 13.48 | 24.44 |
| TraesCS5D01G240600.1 | Wheat | nucleus | 27.94 | 23.22 |
| TraesCS2D01G199300.3 | Wheat | nucleus | 38.48 | 18.58 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G116300.1 | EnsemblPlantsGene:TraesCS6D01G116300 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF46 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr6D:-:82634263..82636617
Molecular Weight (calculated)
44570.0 Da
IEP (calculated)
8.504
GRAVY (calculated)
-0.478
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCDLSSDHH EATGSSSHGG DLGFSSHVLL SPLFAPAATP TPLLPRPAPP LLGLEEPARA KRKRSQPGNP DPGAEVIALS PRTLVATNRF VCEICNKGFQ
101: RDQNLQLHRR GHNLPWKLRQ RTVLLPRPGG DGSGAPRKRV YVCPEPTCVH HDPARALGDL TGIKKHFSRK HGEKRWKCER CAKRYAVHSD WKAHVKNCGT
201: REYRCDCGIL FSRKDSLLTH RAFCDALAEE SARLIAAANN SITTTTACNN NSGGSSNDIS NMLMPSNSSP LFLPFSSPPH AQNPNPLMFL SQEPHHHQVL
301: PPFQPLTYLD DLPMTTGSGS TVSADTVSFR LTPEGSVTMH AGGRHLTRDF LGVDNAGEVE ELQMPVPLCA AAYQGRSIGP TTACCATDLT RQYLGRLPPV
401: NEPWSHNF
101: RDQNLQLHRR GHNLPWKLRQ RTVLLPRPGG DGSGAPRKRV YVCPEPTCVH HDPARALGDL TGIKKHFSRK HGEKRWKCER CAKRYAVHSD WKAHVKNCGT
201: REYRCDCGIL FSRKDSLLTH RAFCDALAEE SARLIAAANN SITTTTACNN NSGGSSNDIS NMLMPSNSSP LFLPFSSPPH AQNPNPLMFL SQEPHHHQVL
301: PPFQPLTYLD DLPMTTGSGS TVSADTVSFR LTPEGSVTMH AGGRHLTRDF LGVDNAGEVE ELQMPVPLCA AAYQGRSIGP TTACCATDLT RQYLGRLPPV
401: NEPWSHNF
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.